CX288862

Overview
NameCX288862
Unique NameCX288862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXB2_DICDI (Beta-hexosaminidase subunit B2 OS=Dictyostelium discoideum GN=hexb2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.063e-20
Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 3
Query:    6 WYLDHLDVPWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLTALPRLHYFRCLLNRRGVQAAPVLNKYAREPPIGPGSCY 353
            +YLD+  V W++VY  EP  GI +     L+LGGE CMW E  D S++   ++PRA A AERLW    +I + N T  A PRL  FRC L  RG+ AAP LN  +   P  P SCY
Sbjct:  455 YYLDNPSVDWEKVYEFEPSNGIHE-KRLRLLLGGETCMWSELVDASNLFAKVFPRAFATAERLWF---SIENSNSTTFAKPRLERFRCFLLERGIGAAP-LNSTS---PDDPNSCY 562          
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXA_BOVIN (Beta-hexosaminidase subunit alpha OS=Bos taurus GN=HEXA PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.184e-19
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 3
Query:    6 WYLDHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLTALPRLHYFRCLLNRRGVQAAPV 305
            WYL+H+     W E+Y  EPL     P  + LV+GGE CMWGE  D++++   +WPRA A AERLWS +      N+   A  RL +FRC L RRGVQA P+
Sbjct:  420 WYLNHITYGPDWKEIYLVEPLAFEGSPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWSNKMV---SNLDF-AFKRLAHFRCELLRRGVQAQPL 517          
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXA_RAT (Beta-hexosaminidase subunit alpha OS=Rattus norvegicus GN=Hexa PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = 3
Query:    6 WYLDHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLT---ALPRLHYFRCLLNRRGVQAAPVLNKYARE 326
            WYL+ +     W E+Y  EPL     P+ + LV+GGE CMWGE  D++++   +WPRA A AERLW       S N+T     A  RL +FRC L RRG+QA P+   Y  +
Sbjct:  419 WYLNRVKYGPDWKEMYKVEPLAFRGTPAQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAIAERLW-------SSNLTTNMDFAFKRLSHFRCELLRRGIQAQPISVGYCEQ 523          
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXA_MOUSE (Beta-hexosaminidase subunit alpha OS=Mus musculus GN=Hexa PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.916e-18
Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = 3
Query:    6 WYLDHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLT---ALPRLHYFRCLLNRRGVQAAPVLNKYARE 326
            WYL+ +     W ++Y  EPL     P  + LV+GGE CMWGE  D++++   +WPRA A AERLW       S N+T     A  RL +FRC L RRG+QA P+   Y  +
Sbjct:  419 WYLNRVKYGPDWKDMYKVEPLAFHGTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLW-------SSNLTTNIDFAFKRLSHFRCELVRRGIQAQPISVGYCEQ 523          
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXA_PONAB (Beta-hexosaminidase subunit alpha OS=Pongo abelii GN=HEXA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 3
Query:    6 WYLDHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLTALPRLHYFRCLLNRRGVQAAPV 305
            WYL+ +     W + Y  EPL     P  + LV+GGE CMWGE  D +++   +WPRA A AERLWS +    + ++T  A  RL +FRC L RRGVQA P+
Sbjct:  420 WYLNRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWSNK---LTSDLTF-AYERLSHFRCELLRRGVQAQPL 517          
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXA_HUMAN (Beta-hexosaminidase subunit alpha OS=Homo sapiens GN=HEXA PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 3
Query:    6 WYLDHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLTALPRLHYFRCLLNRRGVQAAPV 305
            WYL+ +     W + Y  EPL     P  + LV+GGE CMWGE  D +++   +WPRA A AERLWS +    + ++T  A  RL +FRC L RRGVQA P+
Sbjct:  420 WYLNRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWSNK---LTSDLTF-AYERLSHFRCELLRRGVQAQPL 517          
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXB_FELCA (Beta-hexosaminidase subunit beta OS=Felis catus GN=HEXB PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.225e-16
Identity = 42/106 (39.62%), Postives = 57/106 (53.77%), Query Frame = 3
Query:    6 WYLDHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLTALPRLHYFRCLLNRRGVQAAPVLNKY 317
            WYLD +     W   Y  +PL        ++LV+GGE C+WGE  D +++   +WPRA+A  ERLWS  +  S GN    A  RL   RC + RRG+ A P+   Y
Sbjct:  423 WYLDWISYGQDWRNYYKVDPLHFDGSQEQKKLVIGGEACLWGEFVDATNLTPRLWPRASAVGERLWSPEDITSVGN----AYNRLTVHRCRMVRRGISAEPLFTGY 524          
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXB1_DICDI (Beta-hexosaminidase subunit B1 OS=Dictyostelium discoideum GN=hexb1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.354e-15
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 3
Query:    3 FWYLDHLDVPWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLTALPRLHYFRCLLNRRGVQAAPVLNKYAREPPIGPGSCY 353
            +WYL++    W   Y  EP   IS  SN  LVLGGE  +W E+ D+S++ Q ++P ++A AERLWS    I   N+ L A  RL  FRC L +RG+ +AP+ N      P+   SCY
Sbjct:  451 YWYLEYSYSNWIRAYNFEPTLNISK-SNIHLVLGGEGAIWSESIDSSNLFQKLYPTSSAIAERLWS---PIYYTNL-LNAKSRLQSFRCSLLKRGINSAPLNN----SSPLSAFSCY 558          
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXB_RAT (Beta-hexosaminidase subunit beta OS=Rattus norvegicus GN=Hexb PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.017e-15
Identity = 42/106 (39.62%), Postives = 56/106 (52.83%), Query Frame = 3
Query:    6 WYLDHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLTALPRLHYFRCLLNRRGVQAAPVLNKY 317
            WYLD +     W   Y AEPL        ++LV+GGE C+WGE  D +++   +WPRA+A  ERLWS R   +  N    A  RL   RC +  RG+ A P+   Y
Sbjct:  427 WYLDLISYGQDWRNYYKAEPLNFEGSEKQKQLVIGGEACLWGEYVDATNLIPRLWPRASAVGERLWSPRIITNLEN----AYRRLAVHRCRMVSRGIAAQPLFTGY 528          
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXB_MOUSE (Beta-hexosaminidase subunit beta OS=Mus musculus GN=Hexb PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 6.722e-15
Identity = 40/106 (37.74%), Postives = 54/106 (50.94%), Query Frame = 3
Query:    6 WYLDHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLTALPRLHYFRCLLNRRGVQAAPVLNKY 317
            WYLD +     W   Y  EPL        ++LV+GGE C+WGE  D +++   +WPRA+A  ERLWS +      N    A  RL   RC +  RG+ A P+   Y
Sbjct:  428 WYLDLISYGQDWKNYYKVEPLNFEGSEKQKQLVIGGEACLWGEFVDATNLTPRLWPRASAVGERLWSPKTVTDLEN----AYKRLAVHRCRMVSRGIAAQPLYTGY 529          
The following BLAST results are available for this feature:
BLAST of CX288862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
HEXB2_DICDI9.063e-2046.55Beta-hexosaminidase subunit B2 OS=Dictyostelium di... [more]
HEXA_BOVIN1.184e-1947.06Beta-hexosaminidase subunit alpha OS=Bos taurus GN... [more]
HEXA_RAT1.309e-1842.86Beta-hexosaminidase subunit alpha OS=Rattus norveg... [more]
HEXA_MOUSE2.916e-1841.96Beta-hexosaminidase subunit alpha OS=Mus musculus ... [more]
HEXA_PONAB3.808e-1845.10Beta-hexosaminidase subunit alpha OS=Pongo abelii ... [more]
HEXA_HUMAN3.808e-1845.10Beta-hexosaminidase subunit alpha OS=Homo sapiens ... [more]
HEXB_FELCA1.225e-1639.62Beta-hexosaminidase subunit beta OS=Felis catus GN... [more]
HEXB1_DICDI1.354e-1541.88Beta-hexosaminidase subunit B1 OS=Dictyostelium di... [more]
HEXB_RAT3.017e-1539.62Beta-hexosaminidase subunit beta OS=Rattus norvegi... [more]
HEXB_MOUSE6.722e-1537.74Beta-hexosaminidase subunit beta OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionC02006C06SK IF1 Citrus clementina cDNA clone C02006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288862 ID=CX288862; Name=CX288862; organism=Citrus clementina; type=EST; length=520bp
GTTTTTGGTATCTTGACCATCTTGATGTTCCTTGGGATGAAGTCTACACT
GCTGAACCGCTAGAGGGAATATCCGATCCTTCAAACCAAGAGCTTGTGCT
TGGAGGGGAAGTTTGCATGTGGGGTGAGACAGCCGATACCTCAGATATTC
ACCAAACAATATGGCCTCGCGCTGCTGCAGCTGCAGAGCGCTTGTGGAGT
AGGAGGGAGGCGATTTCCTCTGGAAATATTACATTAACTGCATTACCACG
ACTGCACTACTTCAGATGCCTTTTAAATAGGCGTGGGGTTCAAGCTGCTC
CAGTCTTGAATAAGTATGCGAGAGAACCTCCAATTGGCCCTGGATCATGC
TATGTGCAATAAATCTTTCCTTTGTCAGATTGGTCCAAGTTTATGGATCT
GAAGCTGCATTCTGCATGCCTACACGCGAGGAATATGTGTGTTCACAGCA
ACCCGGGCCTGTACTGTAGTCGATTGGCGTTAATGTTCGAGTAAAATGCA
TGTCAATCTGGCCACAGGAT
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