CX288868

Overview
NameCX288868
Unique NameCX288868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig158 contig Ccv1_Contig158:1..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.587e-23
Identity = 54/72 (75.00%), Postives = 59/72 (81.94%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFTMPDMGS 530
            AMLKLGMKPVTGVSRVTIKRTKN+LFFISKPDVFKSP+SETYVIFGEAKIED            F MP++G+
Sbjct:   79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQAAQQFRMPEIGA 150          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22
Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFTMPDMGSVM 536
            AMLKLGMKPVT VSRVTIKR+KN+LF ISKPDVFKSPNSETYVIFGEAKI+D            F MPD+ S++
Sbjct:   74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQAAQRFKMPDVASMI 147          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.421e-21
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFTMPDMGSVMAK 542
            AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED            F  PD+ +V++K
Sbjct:   69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISK 144          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFTMPDMGSVMAK 542
            AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED            F  P++ +V+++
Sbjct:   65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISQ 140          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFTMPDMGSVM 536
            A+LKLGMKPV+ VSRVTIKR KN+LF ISKPDV+KSPN+ETYVIFGEAK++D            F MPD+ S++
Sbjct:   71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQLQTQAAQRFKMPDVTSML 144          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 48/77 (62.34%), Postives = 55/77 (71.43%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFTMPDMGSVMAKP 545
            AMLKLGMKPV+GVSRVTIK++KNILF IS PDVFKSP S+TY+ FGEAKIED            F  P++  V  KP
Sbjct:   72 AMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQTQAAEQFKAPNLSHVTMKP 148          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.520e-15
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFTMP 518
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F +P
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVP 146          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.985e-15
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct:   78 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 129          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_XENLA (Nascent polypeptide-associated complex subunit alpha OS=Xenopus laevis GN=naca PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.985e-15
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct:   77 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 128          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_PONAB (Nascent polypeptide-associated complex subunit alpha OS=Pongo abelii GN=NACA PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.985e-15
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 130          
The following BLAST results are available for this feature:
BLAST of CX288868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA2_ARATH2.587e-2375.00Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH8.322e-2270.27Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH2.421e-2165.79Nascent polypeptide-associated complex subunit alp... [more]
NACA3_ARATH2.677e-2063.16Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH7.789e-2063.51Nascent polypeptide-associated complex subunit alp... [more]
NACA_PINTA1.329e-1962.34Nascent polypeptide-associated complex subunit alp... [more]
NACA_ORENI1.520e-1557.35Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENTR1.985e-1571.15Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENLA1.985e-1571.15Nascent polypeptide-associated complex subunit alp... [more]
NACA_PONAB1.985e-1571.15Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC02006C12SK IF1 Citrus clementina cDNA clone C02006C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288868 ID=CX288868; Name=CX288868; organism=Citrus clementina; type=EST; length=547bp
AAATAAAGAAGCAGCGGCAACCAAACCTAACAGAACAAAGTTATCCCTAT
CTATCGAGGCTAAACTAGAGAAAGCTTATCAATTTTATCAAAATGTCGCC
ACCAGCTCCCATCGTTGAGACACCAGTCGAGGAACCTGAAAAAATTAAGC
CTCAGGATGAGGATGAGCCTGTAGTTGAAGATGTTAAGGACGACGAGGAA
GAAGATGATGACCACGACAATGACGATGATGACGAGGACGACGATGACAA
CAAAGACGATGGAGCTCAAGGTGGGAGTTCAAAGCAGAGCAGAAGTGAGA
AAAAGAGCCGCAAGGCAATGCTGAAGTTGGGCATGAAACCTGTAACAGGA
GTTAGCAGGGTAACCATCAAGAGAACCAAAAATATACTATTTTTCATCTC
AAAGCCTGATGTTTTCAAGAGCCCAAATTCTGAAACATACGTCATATTTG
GGGAAGCCAAAATAGAGGATTTGAGCACCCAGCTGCAGACACAGGCTGCC
CAGCAGTTCACGATGCCTGACATGGGATCGGTGATGGCGAAACCAGA
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