CX288871

Overview
NameCX288871
Unique NameCX288871
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig159 contig Ccv1_Contig159:1..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288871 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 2.230e-75
Identity = 140/182 (76.92%), Postives = 148/182 (81.32%), Query Frame = 2
Query:    2 EDVKRALEEQYGGEEELXXXXXXXXXXXXXXX-KYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLXXXXXXXXXXRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVS 544
            ED+KRALEEQYGGEEEL                KYSNAYMLVYIRESDKDKIICNVDEKDIAEHLR+RL          RRYKAQAHLYTIIKVARDEDL EQIG+DIYFDLVDHDKVRSFR+QKQT F  FKEE+AKEFG+P+QLQRFWIWAKRQNHTYRPNRPL PQEE Q VGQ+RE S
Sbjct:  479 EDLKRALEEQYGGEEELPQTNPGFNNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRVRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLKEQIGKDIYFDLVDHDKVRSFRIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLTPQEELQPVGQIREAS 660          
BLAST of CX288871 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 3.220e-74
Identity = 134/181 (74.03%), Postives = 147/181 (81.22%), Query Frame = 2
Query:    2 EDVKRALEEQYGGEEELXXXXXXXXXXXXXXXKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLXXXXXXXXXXRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVS 544
            EDVKRALEEQYGGEEEL               KYSNAYMLVYIRESDKDKIICNVDEKDIAEHLR+RL          R+YKAQAHL+T IKVARD+D+ EQIG++IYFDLVDH+KVRSFR+QKQT F  FKEE+AKEFG+P+QLQRFWIWAKRQNHTYRPNRPL P EE QTVGQ+RE S
Sbjct:  478 EDVKRALEEQYGGEEELPQNNPGFNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRVRLKKEQEEKEDKRKYKAQAHLFTTIKVARDDDITEQIGKNIYFDLVDHEKVRSFRIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLSPNEELQTVGQIREAS 658          
BLAST of CX288871 vs. ExPASy Swiss-Prot
Match: UBP5_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 5 OS=Schizosaccharomyces pombe GN=ubp5 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.423e-13
Identity = 45/165 (27.27%), Postives = 80/165 (48.48%), Query Frame = 2
Query:    8 VKRALEEQYGGEEELXXXXXXXXXXXXXXXKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLXXXXXXXXXXRRYKAQAHLYTIIKVARDEDLAEQIGRDI--YFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPL 496
            ++  LEE YGG+  +               ++ +AYML+Y+R+   D+++  V   +I EHL+  L          R+ + ++HLYT +++   E  +E    DI  + +    + +  FR++K+  F  F   +A++ G P +  RFW   KR N T R   P+
Sbjct:  490 LREVLEENYGGDYIMHPPFRSPVKLK----RFMSAYMLLYLRKDKLDELMNPVSADEIPEHLKEALNPSIQLAELRRKERLESHLYTKVQLITPEFYSEHHEFDIADFGNAYKEETIPQFRIKKEAKFSEFIPIVAEKLGYPQECMRFWYVVKRHNCTVRVESPV 650          
BLAST of CX288871 vs. ExPASy Swiss-Prot
Match: UBP7_RAT (Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.140e-13
Identity = 48/160 (30.00%), Postives = 74/160 (46.25%), Query Frame = 2
Query:   11 KRALEEQYGGEEELXXXXXXXXXXXXXXXKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLXXXXXXXXXXRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVR--SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRP 484
            + A+E  YGG ++                  +NAYMLVYIRES   +++  V + DI + L  RL          R+ + +AHLY  +++  ++      G D+Y    D +KVR   F+V K +S   F + +++  G P    R W    R N T RP
Sbjct:  492 EEAIEHNYGGHDD-----------DLSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVRYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRP 636          
BLAST of CX288871 vs. ExPASy Swiss-Prot
Match: UBP7_MOUSE (Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.140e-13
Identity = 48/160 (30.00%), Postives = 74/160 (46.25%), Query Frame = 2
Query:   11 KRALEEQYGGEEELXXXXXXXXXXXXXXXKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLXXXXXXXXXXRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVR--SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRP 484
            + A+E  YGG ++                  +NAYMLVYIRES   +++  V + DI + L  RL          R+ + +AHLY  +++  ++      G D+Y    D +KVR   F+V K +S   F + +++  G P    R W    R N T RP
Sbjct:  492 EEAIEHNYGGHDD-----------DLSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVRYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRP 636          
BLAST of CX288871 vs. ExPASy Swiss-Prot
Match: UBP7_HUMAN (Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 9.222e-13
Identity = 47/160 (29.38%), Postives = 74/160 (46.25%), Query Frame = 2
Query:   11 KRALEEQYGGEEELXXXXXXXXXXXXXXXKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLXXXXXXXXXXRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVR--SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRP 484
            + A+E  YGG ++                  +NAYMLVYIRES   +++  V + DI + L  RL          R+ + +AHLY  +++  ++      G D+Y    D +KV+   F+V K +S   F + +++  G P    R W    R N T RP
Sbjct:  491 EEAIEHNYGGHDD-----------DLSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRP 635          
BLAST of CX288871 vs. ExPASy Swiss-Prot
Match: UBP7_CHICK (Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.054e-12
Identity = 46/160 (28.75%), Postives = 74/160 (46.25%), Query Frame = 2
Query:   11 KRALEEQYGGEEELXXXXXXXXXXXXXXXKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLXXXXXXXXXXRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVR--SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRP 484
            + A+E  YGG ++                  +NAYMLVYIRES   +++  V + DI + L  RL          R+ + +AHLY  +++  ++      G D+Y    D +KV+   F+V K ++   F + +++  G P    R W    R N T RP
Sbjct:  491 EEAIEHNYGGHDD-----------DLSVRHCTNAYMLVYIRESKLSEVLQPVTDHDIPQQLVERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVKYTVFKVLKNSTLTEFVQNLSQTMGFPQDQIRLWPMQARSNGTKRP 635          
The following BLAST results are available for this feature:
BLAST of CX288871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
UBP12_ARATH2.230e-7576.92Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
UBP13_ARATH3.220e-7474.03Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
UBP5_SCHPO1.423e-1327.27Probable ubiquitin carboxyl-terminal hydrolase 5 O... [more]
UBP7_RAT4.140e-1330.00Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus ... [more]
UBP7_MOUSE4.140e-1330.00Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus mus... [more]
UBP7_HUMAN9.222e-1329.38Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sa... [more]
UBP7_CHICK2.054e-1228.75Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus ... [more]
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Properties
Property NameValue
Genbank descriptionC02006D04SK IF1 Citrus clementina cDNA clone C02006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288871 ID=CX288871; Name=CX288871; organism=Citrus clementina; type=EST; length=545bp
AGAAGATGTGAAGAGGGCTTTGGAAGAGCAGTATGGTGGTGAAGAAGAGT
TGCCACCGACCAATCCTGGTTTCAATAACACTCCTTTTAAGTTCACAAAA
TACTCAAATGCATACATGCTTGTGTACATACGTGAAAGTGATAAGGACAA
AATAATATGTAATGTTGATGAGAAGGACATTGCTGAACACCTGAGGATAA
GGTTAAAGAAAGAACAGGAAGAGAAGGAGGACAAGAGAAGATATAAAGCA
CAAGCCCATCTTTACACTATCATCAAGGTTGCACGAGATGAGGACCTTGC
AGAGCAGATTGGAAGGGATATATATTTTGACCTGGTGGATCATGACAAAG
TTCGTAGTTTCCGTGTTCAGAAACAAACGTCATTTATGGCTTTTAAGGAG
GAAATTGCCAAAGAGTTTGGTATACCAATACAGCTTCAGCGTTTTTGGAT
TTGGGCAAAGCGTCAAAATCATACATATCGTCCCAATAGACCATTGCTAC
CCCAGGAGGAAGCACAAACTGTTGGACAATTGAGAGAGGTTTCAA
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