CX288923

Overview
NameCX288923
Unique NameCX288923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288923 vs. ExPASy Swiss-Prot
Match: JMT_ARATH (Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.022e-40
Identity = 98/215 (45.58%), Postives = 127/215 (59.07%), Query Frame = 3
Query:    6 LHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFG-----SCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVP-KELVSE---CGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIGN------DKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETS 605
            L   LNDLP NDFN +  SLP FY+R+   K    FG     SCF+   PGS YGRLFP   L+ V+SS  L+WLSQVP +E   E       L N   + ++KT SP + HKAY  QF++DF  FL  R EEL  GGRM+L+F+G        +     +EL+   L  M  EG+IEE K+++FN P Y    EE++ VIE+EGSF+I +LE S
Sbjct:   91 LRVSLNDLPSNDFNYICASLPEFYDRVNNNKEGLGFGRGGGESCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCREAEKEDRTITADLENMGKIYISKT-SPKSAHKAYALQFQTDFLVFLRSRSEELVPGGRMVLSFLGRRSLDPTTEESCYQWELLAQALMSMAKEGIIEEEKIDAFNAPYYAASSEELKMVIEKEGSFSIDRLEIS 304          
BLAST of CX288923 vs. ExPASy Swiss-Prot
Match: JMT_BRARP (Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.634e-38
Identity = 91/215 (42.33%), Postives = 126/215 (58.60%), Query Frame = 3
Query:   18 LNDLPGNDFNTLSKSLPSFYERLKTEKRNDDF--------GSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVP-KELVSECGIPLL----NKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIGNDKHHTGV------FELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETS 605
            LNDLP NDFN +  SLP FY+R+K    N +         G CF+   PGS YGRLFP   L+ V+SS  L+WLSQVP  E+  + G+ +     N+  + ++KT SP + HK Y  QF++DF+ FL  R EEL  GGRM+L+F+G              +EL+   L  +  EG+IEE  +++FN P Y    EE++  IE+EGSF+I +LE S
Sbjct:   95 LNDLPSNDFNYIFASLPEFYDRVKKRDNNYESLGFEHGSGGPCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCGEVNKKDGVVITADLDNRGKIYLSKT-SPKSAHKVYALQFQTDFSVFLRSRSEELVPGGRMVLSFLGRSSPDPTTEESCYQWELLAQALMSLAKEGIIEEENIDAFNAPYYAASPEELKMAIEKEGSFSIDRLEIS 308          
BLAST of CX288923 vs. ExPASy Swiss-Prot
Match: BAMT_ANTMA (Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.442e-36
Identity = 88/201 (43.78%), Postives = 115/201 (57.21%), Query Frame = 3
Query:   15 FLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIG------NDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLE 599
            FLNDLP NDFN L K L            + + G+CF+   PGS YGRL P   L+  YSS+ ++WLSQVP+ L         N++++ +A T SP  V+KAY  Q+E DF++FL  R EE+  GGRM+L F G      + K    +F L+   L DMV EGL++   L SFN PIY PC  EV   I  EGSF + +LE
Sbjct:   98 FLNDLPDNDFNNLFKLL------------SHENGNCFVYGLPGSFYGRLLPKKSLHFAYSSYSIHWLSQVPEGLEDN------NRQNIYMA-TESPPEVYKAYAKQYERDFSTFLKLRGEEIVPGGRMVLTFNGRSVEDPSSKDDLAIFTLLAKTLVDMVAEGLVKMDDLYSFNIPIYSPCTREVEAAILSEGSFTLDRLE 279          
BLAST of CX288923 vs. ExPASy Swiss-Prot
Match: MT797_ARATH (Probable S-adenosylmethionine-dependent methyltransferase At5g37970 OS=Arabidopsis thaliana GN=At5g37970 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.616e-20
Identity = 72/200 (36.00%), Postives = 103/200 (51.50%), Query Frame = 3
Query:   21 NDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFI----GNDKHHTG---VFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLE 599
            ND P NDFNTL ++ P F        R + F    +GV PGS +GR+ P   L++ ++S+ L+WLS VP+ +  +   P LNK  +          V KAY  QF  DF  FL  R EEL  GG MIL+      G  K  T    V +++G  L D+   G+  + K+E F+ P Y P + E +  IE+  +FN+  +E
Sbjct:  106 NDQPNNDFNTLFRTQPFF-------SRKEYFS---VGV-PGSFHGRVLPKNSLHIGHTSYTLHWLSNVPQHVCDKKS-PALNKSYIQCNNLVD--EVTKAYKIQFRKDFGGFLEARAEELVSGGLMILSGQCLPDGIPKALTWQGVVIDMIGDCLMDLAKLGITSKEKIELFSLPTYIPHISEFKANIEQNENFNVETME 291          
BLAST of CX288923 vs. ExPASy Swiss-Prot
Match: MT878_ARATH (Probable S-adenosylmethionine-dependent methyltransferase At5g38780 OS=Arabidopsis thaliana GN=At5g38780 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.696e-19
Identity = 69/202 (34.16%), Postives = 103/202 (50.99%), Query Frame = 3
Query:   15 FLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMIL------NFIGNDKHHTGVF-ELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLE 599
            + NDLP NDFNTL ++ P          + + F    +GV PGS YGR+ P   +++  +SF  +WLS+VP+E+  +  +   NK  +          V +AY  QFE D   FL  R EEL  GG MI       + +   +  +G+  + +G  L DM   G+  E K+E FN P+Y+P V E++  IE+   F I  +E
Sbjct:  103 YFNDLPNNDFNTLFRTQPP-------SSKQEYFS---VGV-PGSFYGRVLPRNSIHIGNTSFTTHWLSKVPEEVCDKNSLAW-NKNYIHCNNLIE--EVTEAYKVQFEKDMGVFLKARAEELVPGGLMITLGQCLPDGVAMYETWSGIVKDTIGDCLQDMATLGVTTEEKIEMFNLPVYFPQVSELKGAIEQNIRFTIEMME 290          
BLAST of CX288923 vs. ExPASy Swiss-Prot
Match: MT810_ARATH (Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.696e-19
Identity = 71/206 (34.47%), Postives = 105/206 (50.97%), Query Frame = 3
Query:   15 FLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIGN---------DKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETS 605
            F ND P NDFNTL ++ P   ER        ++ S  +GV PGS YGR+ P   +++ ++S+  +WLS+VP  +  +  +   NK  +          V KAY  QF  D   FL+ R EEL  GG MI+  IG          +     V + +G  L DM   G+  E K++ F+ P+Y+P   E++  IE+ GSF I  +ET+
Sbjct:  101 FFNDQPTNDFNTLFRTQPLSPER--------EYFS--VGV-PGSFYGRVLPRNSIHIGHTSYTTHWLSKVPDNVCDKKSMAW-NKNYIQCNNLLE--EVTKAYKVQFIKDMEIFLDARAEELVPGGLMIV--IGECLPDGVSLYETWQGYVMDTIGDCLMDMAKSGITSEEKIDLFSLPVYFPQFSELKGEIEKNGSFTIELMETT 290          
BLAST of CX288923 vs. ExPASy Swiss-Prot
Match: MT799_ARATH (Probable S-adenosylmethionine-dependent methyltransferase At5g37990 OS=Arabidopsis thaliana GN=At5g37990 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 8.416e-19
Identity = 69/200 (34.50%), Postives = 102/200 (51.00%), Query Frame = 3
Query:   21 NDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFI----GNDKHHTG---VFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLE 599
            ND P NDFNTL ++ P   ++              +GV PGS +GR+ P   L++ + ++ L+WLS VP+ +  +   P LNK  +          V +AY  QF+ D   FL  R EEL  GG MIL+      G  K  T    V +++G  L DM  +G+  + K+E F+ PIY P + E +  IER  +F+I  +E
Sbjct:  106 NDQPNNDFNTLFRTQPISSKQAYLS----------VGV-PGSFHGRVLPKNSLHIGHITYALHWLSTVPQHVCDKKS-PALNKSYIQCNNLVE--EVTEAYRVQFKKDMGDFLGARAEELVSGGLMILSGQCLPDGVPKALTWQGVVIDMIGDCLMDMAKQGITTKEKIELFSLPIYIPHISEFKAEIERNENFSIETME 291          
The following BLAST results are available for this feature:
BLAST of CX288923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
JMT_ARATH1.022e-4045.58Jasmonate O-methyltransferase OS=Arabidopsis thali... [more]
JMT_BRARP3.634e-3842.33Jasmonate O-methyltransferase OS=Brassica rapa sub... [more]
BAMT_ANTMA4.442e-3643.78Benzoate carboxyl methyltransferase OS=Antirrhinum... [more]
MT797_ARATH2.616e-2036.00Probable S-adenosylmethionine-dependent methyltran... [more]
MT878_ARATH1.696e-1934.16Probable S-adenosylmethionine-dependent methyltran... [more]
MT810_ARATH1.696e-1934.47Probable S-adenosylmethionine-dependent methyltran... [more]
MT799_ARATH8.416e-1934.50Probable S-adenosylmethionine-dependent methyltran... [more]
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Properties
Property NameValue
Genbank descriptionC02007A02SK IF1 Citrus clementina cDNA clone C02007A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288923 ID=CX288923; Name=CX288923; organism=Citrus clementina; type=EST; length=609bp
CAATATTGCATGCTTTTCTCAATGATCTTCCTGGAAATGATTTCAATACT
CTTTCCAAATCTCTTCCAAGCTTTTATGAGAGATTGAAGACAGAAAAGCG
CAATGACGATTTTGGTTCATGTTTCATAGGTGTAGCCCCTGGGTCTCTCT
ATGGAAGGCTATTTCCTCCATGTTTCCTAAACTTGGTTTACTCTTCTTTC
TGTCTTAATTGGCTCTCTCAGGTACCCAAAGAGTTAGTAAGTGAATGTGG
AATTCCTTTATTAAATAAAAGGGATGTCTGCGTAGCAAAAACCTGTAGCC
CTTCTAATGTGCATAAAGCATACTTGGATCAATTTGAAAGTGATTTCACA
TCATTTCTCAATTTTCGATGGGAAGAATTGAAGATTGGAGGTCGTATGAT
TCTTAACTTTATAGGTAATGATAAACACCATACGGGTGTTTTTGAGTTAA
TGGGAATGGTGTTGAATGACATGGTCTATGAGGGTTTGATTGAAGAATCA
AAATTGGAGTCATTCAATTATCCAATCTATTACCCTTGTGTTGAAGAAGT
AAGACAAGTTATCGAAAGAGAAGGATCCTTTAACATCCATCAGCTTGAAA
CATCACATA
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