CX288926

Overview
NameCX288926
Unique NameCX288926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15371 contig Ccv1_Contig15371:430..1033. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288926 vs. ExPASy Swiss-Prot
Match: VSR1_ARATH (Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2)

HSP 1 Score: 353.599 bits (906), Expect = 4.413e-97
Identity = 154/202 (76.24%), Postives = 179/202 (88.61%), Query Frame = 3
Query:    3 DVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECPIVRGVKFVGDGYTHCEASGASRCSINNGGCWKKIQDGKSFSACVENSLHGCKCPPGFRGDGVNNCEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCI--SKDVRSEASW 602
            DVTILPTLV+NNRQYRGKL+KGAVLKA+C+GFQE+TEPAICL+ED+ETNECLENNGGCWQDKAANITAC+DTFRGR+CECP V+GVKFVGDGYTHC+ASGA  C INNGGCW++ + G ++SACV++    CKCP GF+GDGV NCEDVDEC+EK  CQCPECKCK+TWGSYECSC +GLLYM+EHDTCI   K   ++ SW
Sbjct:  365 DVTILPTLVVNNRQYRGKLEKGAVLKAMCSGFQESTEPAICLTEDLETNECLENNGGCWQDKAANITACRDTFRGRLCECPTVQGVKFVGDGYTHCKASGALHCGINNGGCWRESRGGFTYSACVDDHSKDCKCPLGFKGDGVKNCEDVDECKEKTVCQCPECKCKNTWGSYECSCSNGLLYMREHDTCIGSGKVGTTKLSW 566          
BLAST of CX288926 vs. ExPASy Swiss-Prot
Match: VSR2_ARATH (Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 4.879e-96
Identity = 148/200 (74.00%), Postives = 175/200 (87.50%), Query Frame = 3
Query:    3 DVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECPIVRGVKFVGDGYTHCEASGASRCSINNGGCWKKIQDGKSFSACVENSLHGCKCPPGFRGDGVNNCEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKDVRSEASW 602
            DVTILPT+VINNRQYRGKL + AVLKA+C+GF+ETTEP ICL+EDIETNECL+NNGGCW+DK  NITAC+DTFRGRVC+CPIV+GVKF+GDGYTHCEASGA RC INNGGCWK+ Q GK++SAC ++   GCKCPPGF GDG+  C+DV+ECEEK ACQC +CKCK+TWGSYECSC   LLY++EHD CI++D R + SW
Sbjct:  369 DVTILPTIVINNRQYRGKLQRSAVLKALCSGFRETTEPPICLTEDIETNECLQNNGGCWEDKTTNITACRDTFRGRVCQCPIVQGVKFLGDGYTHCEASGALRCGINNGGCWKQTQMGKTYSACRDDHSKGCKCPPGFIGDGLKECKDVNECEEKTACQCRDCKCKNTWGSYECSCSGSLLYIREHDICINRDARGDFSW 568          
BLAST of CX288926 vs. ExPASy Swiss-Prot
Match: VSR4_ARATH (Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana GN=VSR4 PE=2 SV=2)

HSP 1 Score: 339.347 bits (869), Expect = 8.612e-93
Identity = 144/192 (75.00%), Postives = 169/192 (88.02%), Query Frame = 3
Query:    3 DVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECPIVRGVKFVGDGYTHCEASGASRCSINNGGCWKKIQDGKSFSACVENSLHGCKCPPGFRGDGVNNCEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISK 578
            DVTILPTLV+NNRQYRGKL+K AVLKA+C+GF+E+TEPAICLS D+ETNECL+NNGGCWQDK+ANITACKDTFRG+VC CPIV GV+F GDGY+HCE SG  RC+INNGGCW + +DG +FSACV+     C+CPPGF+GDGV  CED++EC+EK ACQCPEC CK+TWGSYECSC   LLYM++HDTCISK
Sbjct:  370 DVTILPTLVVNNRQYRGKLEKSAVLKALCSGFEESTEPAICLSTDMETNECLDNNGGCWQDKSANITACKDTFRGKVCVCPIVDGVRFKGDGYSHCEPSGPGRCTINNGGCWHEERDGHAFSACVDKDSVKCECPPGFKGDGVKKCEDINECKEKKACQCPECSCKNTWGSYECSCSGDLLYMRDHDTCISK 561          
BLAST of CX288926 vs. ExPASy Swiss-Prot
Match: VSR3_ARATH (Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 1.469e-92
Identity = 143/192 (74.48%), Postives = 168/192 (87.50%), Query Frame = 3
Query:    3 DVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECPIVRGVKFVGDGYTHCEASGASRCSINNGGCWKKIQDGKSFSACVENSLHGCKCPPGFRGDGVNNCEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISK 578
            DVTILPTLV+NNRQYRGKL+K AVLKA+C+GF+ETTEPAICLS D+E+NECL+NNGGCWQDK+ANITACKDTFRGRVCECP V GV+F GDGY+HCE SG  RC+INNGGCW + +DG +FSACV+     C+CPPGF+GDG   CED++EC+EK ACQCPEC CK+TWGSYECSC   LLY+++HDTCISK
Sbjct:  370 DVTILPTLVVNNRQYRGKLEKSAVLKALCSGFEETTEPAICLSTDVESNECLDNNGGCWQDKSANITACKDTFRGRVCECPTVDGVQFKGDGYSHCEPSGPGRCTINNGGCWHEERDGHAFSACVDKDSVKCECPPGFKGDGTKKCEDINECKEKKACQCPECSCKNTWGSYECSCSGDLLYIRDHDTCISK 561          
BLAST of CX288926 vs. ExPASy Swiss-Prot
Match: VSR1_PEA (Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.345e-90
Identity = 141/201 (70.15%), Postives = 170/201 (84.58%), Query Frame = 3
Query:    3 DVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECPIVRGVKFVGDGYTHCEASGASRCSINNGGCWKKIQDGKSFSACVENSLHGCKCPPGFRGDGVNNCEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKDV-RSEASW 602
            DVTILPTLV+NNRQYRGKL+KGAVLKAIC+GF+ETT+PA+CLS D+ETNECL NNGGCWQDK ANI ACKDTFRGRVCECP+V GV+F GDGYT CE SG  RC INNGGCW   ++G +FSAC+++    C+CP GF+GDGV NCED+DEC++K ACQCPEC CK+TWGSY CSC   LLY+++ DTCISK   +++++W
Sbjct:  365 DVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTDPAVCLSNDVETNECLTNNGGCWQDKTANIAACKDTFRGRVCECPLVDGVQFKGDGYTTCEVSGHGRCKINNGGCWHDARNGHAFSACLDDGGVKCQCPAGFKGDGVKNCEDIDECKDKKACQCPECSCKNTWGSYNCSCSGDLLYIKDQDTCISKTASQAKSTW 565          
BLAST of CX288926 vs. ExPASy Swiss-Prot
Match: VSR7_ARATH (Vacuolar-sorting receptor 7 OS=Arabidopsis thaliana GN=VSR7 PE=2 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 4.150e-79
Identity = 125/200 (62.50%), Postives = 158/200 (79.00%), Query Frame = 3
Query:    3 DVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECPIVRGVKFVGDGYTHCEASGASRCSINNGGCWKKIQDGKSFSACVENSLHGCKCPPGFRGDGVNNCEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKDVRSEASW 602
            DVTILPTLVINN QYRG+L++ AVLKAICAGF ET+EPAICL+  +ETNECLENNGGCWQD  ANITAC+DTFRGR+CECP+V+GV++ GDGYT C   G +RC++NNGGCW   ++G +FSAC ++   GCKCP GF+GDG+  CED++EC+E+  CQC  C+CK++WG Y+CSC    LY+ + DTCI +     A W
Sbjct:  368 DVTILPTLVINNAQYRGRLERTAVLKAICAGFNETSEPAICLNTGLETNECLENNGGCWQDTKANITACQDTFRGRLCECPVVKGVQYKGDGYTSCTPYGPARCTMNNGGCWSDTRNGLTFSACSDSVSTGCKCPEGFQGDGL-TCEDINECKERSVCQCSGCRCKNSWGGYKCSCSGDRLYINDQDTCIERYGSKTAWW 566          
BLAST of CX288926 vs. ExPASy Swiss-Prot
Match: VSR5_ARATH (Vacuolar-sorting receptor 5 OS=Arabidopsis thaliana GN=VSR5 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 7.826e-78
Identity = 122/191 (63.87%), Postives = 153/191 (80.10%), Query Frame = 3
Query:    6 VTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECPIVRGVKFVGDGYTHCEASGASRCSINNGGCWKKIQDGKSFSACVENSLHGCKCPPGFRGDGVNNCEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISK 578
            VTI PTL+INN QYRGKL++ AVLKAIC+GF+E TEP+ICL+ DIETNECL  NGGCWQDK +N+TACKDTFRGRVCECP+V GV++ GDGYT C+  G +RCS+NNG CW + + G +FS+C ++   GC+CP GF GDG+  CED+DEC+EK AC+C  CKCK+ WG YEC C +  +YM+E DTCI +
Sbjct:  367 VTIFPTLMINNAQYRGKLERTAVLKAICSGFKERTEPSICLNSDIETNECLIENGGCWQDKRSNVTACKDTFRGRVCECPVVDGVQYKGDGYTSCKPYGPARCSMNNGDCWSETRKGLTFSSCSDSETSGCRCPLGFLGDGL-KCEDIDECKEKSACKCDGCKCKNNWGGYECKCSNNSIYMKEEDTCIER 556          
BLAST of CX288926 vs. ExPASy Swiss-Prot
Match: VSR6_ARATH (Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 6.201e-75
Identity = 122/192 (63.54%), Postives = 146/192 (76.04%), Query Frame = 3
Query:    3 DVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEDIETNECLENNGGCWQDKAANITACKDTFRGRVCECPIVRGVKFVGDGYTHCEASGASRCSINNGGCWKKIQDGKSFSACVENSLHGCKCPPGFRGDGVNNCEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISK 578
            DVTILPTL++NN QYRGKL++ AVLKAIC+GF+E TEP ICLS DIETNECLE NGGCW+DK +N+TACKDTFRGRVCECP+V GV++ GDGYT CE  G +RCSIN GGCW + + G +FSAC      GC+CPPGF+GDG+       +CE   ACQC  C CK+ WG +EC C    LYM+E DTCI +
Sbjct:  367 DVTILPTLIVNNAQYRGKLERNAVLKAICSGFKERTEPGICLSGDIETNECLEANGGCWEDKKSNVTACKDTFRGRVCECPVVNGVQYKGDGYTSCEPYGPARCSINQGGCWSETKKGLTFSACSNLETSGCRCPPGFKGDGL-------KCE---ACQCDGCNCKNKWGGFECKCSGNRLYMKEQDTCIER 548          
The following BLAST results are available for this feature:
BLAST of CX288926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VSR1_ARATH4.413e-9776.24Vacuolar-sorting receptor 1 OS=Arabidopsis thalian... [more]
VSR2_ARATH4.879e-9674.00Vacuolar-sorting receptor 2 OS=Arabidopsis thalian... [more]
VSR4_ARATH8.612e-9375.00Vacuolar-sorting receptor 4 OS=Arabidopsis thalian... [more]
VSR3_ARATH1.469e-9274.48Vacuolar-sorting receptor 3 OS=Arabidopsis thalian... [more]
VSR1_PEA2.345e-9070.15Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP... [more]
VSR7_ARATH4.150e-7962.50Vacuolar-sorting receptor 7 OS=Arabidopsis thalian... [more]
VSR5_ARATH7.826e-7863.87Vacuolar-sorting receptor 5 OS=Arabidopsis thalian... [more]
VSR6_ARATH6.201e-7563.54Vacuolar-sorting receptor 6 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC02007A05SK IF1 Citrus clementina cDNA clone C02007A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288926 ID=CX288926; Name=CX288926; organism=Citrus clementina; type=EST; length=604bp
GAGATGTTACTATACTGCCAACACTTGTTATTAACAATAGACAGTATAGA
GGTAAGTTGGACAAGGGAGCAGTTCTCAAGGCTATTTGTGCAGGTTTTCA
GGAGACTACAGAGCCAGCCATATGCTTAAGTGAAGATATTGAAACTAATG
AATGCTTAGAAAACAATGGTGGGTGCTGGCAGGACAAAGCCGCTAACATA
ACAGCATGCAAGGATACTTTCCGAGGAAGAGTGTGCGAATGTCCTATAGT
ACGAGGTGTGAAGTTTGTTGGTGATGGTTATACTCATTGTGAAGCTTCAG
GAGCTTCACGCTGTTCAATTAATAATGGAGGGTGTTGGAAGAAAATCCAA
GATGGCAAATCTTTTTCTGCTTGTGTTGAGAATAGCTTGCATGGTTGCAA
GTGTCCACCTGGATTTAGGGGTGATGGAGTCAACAACTGTGAAGATGTGG
ATGAGTGCGAAGAGAAGCTGGCATGTCAATGCCCAGAGTGCAAATGCAAA
GATACATGGGGCAGTTACGAGTGCAGCTGTGGCAGTGGATTGTTGTACAT
GCAAGAGCATGACACCTGCATAAGCAAAGATGTTAGATCGGAGGCTAGCT
GGGG
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