CX288927

Overview
NameCX288927
Unique NameCX288927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length571
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288927_ssr475 microsatellite CX288927_ssr475:475..486. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig158 contig Ccv1_Contig158:82..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.319e-27
Identity = 65/112 (58.04%), Postives = 72/112 (64.29%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AMLKLGMKPVTGVSRVTIKRTKN+LFFISKPDVFKSP+SETYVIFGEAKIED            FRMP++G+   + +                        RDIDLVMTQA
Sbjct:   79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQAAQQFRMPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQA 190          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.245e-25
Identity = 62/112 (55.36%), Postives = 70/112 (62.50%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AMLKLGMKPVT VSRVTIKR+KN+LF ISKPDVFKSPNSETYVIFGEAKI+D            F+MPD+ S++   D                        +DIDLVMTQA
Sbjct:   74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETGVEAKDIDLVMTQA 185          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.878e-23
Identity = 59/112 (52.68%), Postives = 72/112 (64.29%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED            F+ PD+ +V++K +                       P+DI+LVMTQA
Sbjct:   69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISKGE----SSSAAVVQDDEEVDEEGVEPKDIELVMTQA 176          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.428e-22
Identity = 57/112 (50.89%), Postives = 68/112 (60.71%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            A+LKLGMKPV+ VSRVTIKR KN+LF ISKPDV+KSPN+ETYVIFGEAK++D            F+MPD+ S++                            RDIDLVMTQA
Sbjct:   71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQLQTQAAQRFKMPDVTSMLPNAGSEATMAPLAEEEDEDDVDDTGVEARDIDLVMTQA 182          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.156e-22
Identity = 57/113 (50.44%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPD-XXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED            F+ P++ +V+++ +                        P+DI+LVMTQA
Sbjct:   65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELVMTQA 177          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.259e-22
Identity = 57/112 (50.89%), Postives = 68/112 (60.71%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AMLKLGMKPV+GVSRVTIK++KNILF IS PDVFKSP S+TY+ FGEAKIED            F+ P++  V  KP+                       P+DI+LVMTQA
Sbjct:   72 AMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQTQAAEQFKAPNLSHVTMKPE-----SSTAAQEDEDEVDDTGVEPKDIELVMTQA 178          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACAD_MOUSE (NAC-alpha domain-containing protein 1 OS=Mus musculus GN=Nacad PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.082e-17
Identity = 49/115 (42.61%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMA---KPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AM KLG++ + GV+R+TI+++KNILF I+KPDVFKSP S+TYV+FGEAKIED            F++P   S +     P                        PRDI+LVM QA
Sbjct: 1363 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSALVPELSPGPRVRPECEEQEEEDEEVEEAGLEPRDIELVMAQA 1477          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.998e-16
Identity = 47/112 (41.96%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++P  G  ++                           +DI+LVM+QA
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVP--GETVSNVQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQA 188          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.691e-15
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA
Sbjct:   78 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQA 187          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_XENLA (Nascent polypeptide-associated complex subunit alpha OS=Xenopus laevis GN=naca PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.691e-15
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA
Sbjct:   77 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGETVSNIQENTQTPTVQEESEEEEVDEAGVEVKDIELVMSQA 186          
The following BLAST results are available for this feature:
BLAST of CX288927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA2_ARATH7.319e-2758.04Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH5.245e-2555.36Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH2.878e-2352.68Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH1.428e-2250.89Nascent polypeptide-associated complex subunit alp... [more]
NACA3_ARATH4.156e-2250.44Nascent polypeptide-associated complex subunit alp... [more]
NACA_PINTA9.259e-2250.89Nascent polypeptide-associated complex subunit alp... [more]
NACAD_MOUSE3.082e-1742.61NAC-alpha domain-containing protein 1 OS=Mus muscu... [more]
NACA_ORENI1.998e-1641.96Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENTR1.691e-1541.07Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENLA1.691e-1541.07Nascent polypeptide-associated complex subunit alp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02007A06SK IF1 Citrus clementina cDNA clone C02007A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288927 ID=CX288927; Name=CX288927; organism=Citrus clementina; type=EST; length=571bp
ATTTTATCAAAATGTCGCCACCAGCTCCCATCGTTGAGACACCAGTCGAG
GAACCTGAAAAAATTAAGCCTCAGGATGAGGATGAGCCTGTAGTTGAAGA
TGTTAAGGACGATGAGGAAGAAGATGATGACCACGACAATGACGATGATG
ACGAGGACGACGATGACAACAAAGACGATGGAGCTCAAGGAGGGAGTTCA
AAGCAGAGCAGAAGTGAGAAAAAGAGCCGCAAGGCAATGCTGAAGTTGGG
CATGAAACCTGTAACAGGAGTTAGCAGGGTAACCATCAAGAGAACCAAAA
ATATACTATTTTTCATCTCAAAGCCTGATGTTTTCAAGAGCCCAAATTCT
GAAACGTACGTCATATTTGGGGAAGCCAAAATAGAGGATTTGAGCTCCCA
GCTGCAGACACAGGCTGCCCAGCAGTTCAGGATGCCTGACATGGGATCGG
TGATGGCGAAACCAGATGCCTCTTCTGCTGCTGCTGGTGCACAACAAGAT
GAGGAAGAGGAGGAAGTTGATGAGACGGGAGTTGAGCCTCGGGACATTGA
TTTGGTCATGACACAGGCCGG
back to top