CX288930

Overview
NameCX288930
Unique NameCX288930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288930 vs. ExPASy Swiss-Prot
Match: SMT2_ARATH (24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 4.907e-49
Identity = 87/111 (78.38%), Postives = 100/111 (90.09%), Query Frame = 1
Query:    1 ERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPHPPKSS 333
            ERGDALPGLR+Y +I E AK+VGFE+VKEKDLA PPA+PWWTRLKMGR AYWRNHI+V IL+A+G+APKGTV VH+MLFKTADYLTRGGETGIF+PMHM+L RKP  P+ S
Sbjct:  250 ERGDALPGLRAYVDIAETAKKVGFEIVKEKDLASPPAEPWWTRLKMGRLAYWRNHIVVQILSAVGVAPKGTVDVHEMLFKTADYLTRGGETGIFSPMHMILCRKPESPEES 360          
BLAST of CX288930 vs. ExPASy Swiss-Prot
Match: SMT3B_ARATH (24-methylenesterol C-methyltransferase 3 OS=Arabidopsis thaliana GN=SMT3 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.516e-47
Identity = 85/105 (80.95%), Postives = 96/105 (91.43%), Query Frame = 1
Query:    1 ERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 315
            ERGDALPGLRSYA+I   AK+VGFEVVKEKDLAKPP++PWW RLKMGR AYWRNH++V IL+A+G+APKGTV VH MLFKTADYLTRGGETGIF+PMHM+L RKP
Sbjct:  250 ERGDALPGLRSYADIAVTAKKVGFEVVKEKDLAKPPSKPWWNRLKMGRIAYWRNHVVVVILSAIGVAPKGTVDVHKMLFKTADYLTRGGETGIFSPMHMILCRKP 354          
BLAST of CX288930 vs. ExPASy Swiss-Prot
Match: SMT2_ORYSJ (24-methylenesterol C-methyltransferase 2 OS=Oryza sativa subsp. japonica GN=Smt2-1 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.438e-40
Identity = 78/105 (74.29%), Postives = 86/105 (81.90%), Query Frame = 1
Query:    1 ERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 315
            ERGDALPGLR   EI  IAK VGFEV+KE DLA PPA PWWTRLKMGR AYWRN ++V +L  L IAPKG   VH+ML++TA +LTRGGETGIFTPMHMVLLRKP
Sbjct:  255 ERGDALPGLRRQDEIASIAKEVGFEVLKELDLALPPALPWWTRLKMGRIAYWRNSLVVRVLTMLRIAPKGVCEVHEMLYETAQHLTRGGETGIFTPMHMVLLRKP 359          
BLAST of CX288930 vs. ExPASy Swiss-Prot
Match: SMT1_ORYSJ (Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.322e-13
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 1
Query:    1 ERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHI----------LVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 315
            E G+ LP +RS  +  + AK  GFEV+ +KDLA+    PW+  L   RF+     +          +V  L  +G+AP+G+  V + L K A+ L  GG+  IFTPM+  L+RKP
Sbjct:  227 ELGNGLPDIRSTQQCLQAAKDAGFEVIWDKDLAEDSPVPWYLPLDPSRFSLSSFRLTTVGRAITRTMVKALEYVGLAPQGSERVSNFLEKAAEGLVEGGKKEIFTPMYFFLVRKP 341          
BLAST of CX288930 vs. ExPASy Swiss-Prot
Match: SMT1_ARATH (Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.673e-12
Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 1
Query:    1 ERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHI----------LVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 315
            E GD LP +R   +  E  K+ GFEV+ EKDLAK    PW+  L    F+     +          +V IL  + +AP+G+  V + L + A+ L  GG   IFTPM+  L RKP
Sbjct:  221 EIGDGLPDIRLTTKCLEALKQAGFEVIWEKDLAKDSPVPWYLPLDKNHFSLSSFRLTAVGRFITKNMVKILEYIRLAPQGSQRVSNFLEQAAEGLVDGGRREIFTPMYFFLARKP 335          
The following BLAST results are available for this feature:
BLAST of CX288930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SMT2_ARATH4.907e-4978.3824-methylenesterol C-methyltransferase 2 OS=Arabid... [more]
SMT3B_ARATH3.516e-4780.9524-methylenesterol C-methyltransferase 3 OS=Arabid... [more]
SMT2_ORYSJ5.438e-4074.2924-methylenesterol C-methyltransferase 2 OS=Oryza ... [more]
SMT1_ORYSJ3.322e-1337.39Cycloartenol-C-24-methyltransferase 1 OS=Oryza sat... [more]
SMT1_ARATH3.673e-1237.39Cycloartenol-C-24-methyltransferase OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC02007A09SK IF1 Citrus clementina cDNA clone C02007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288930 ID=CX288930; Name=CX288930; organism=Citrus clementina; type=EST; length=630bp
GAACGTGGAGATGCGTTGCCTGGGCTGAGAAGCTACGCGGAAATTACCGA
GATAGCCAAGAGGGTAGGGTTCGAGGTGGTGAAAGAGAAGGATCTGGCCA
AACCGCCAGCCCAGCCCTGGTGGACCCGCCTCAAAATGGGCCGCTTCGCA
TACTGGAGGAATCACATTCTAGTTACAATACTAGCCGCCTTGGGGATTGC
GCCAAAAGGAACCGTTGGTGTTCATGATATGCTTTTTAAGACCGCTGATT
ATTTGACCAGAGGCGGTGAGACCGGAATCTTCACTCCGATGCACATGGTT
CTCCTCAGAAAGCCTCACCCTCCTAAATCTTCTTAGCCAATCGATGAGGT
GACTTACAGTTTCTGTTTCACCTCCTCCTGTTTTTCTTTTTGGTCCTAGG
TTTTCTTTTTCTTTTTCTTTTTCTTTTTTTATTTTTTGCTTAATTTATCA
ATTATCACCATGTATCCCTTGCCTAAAATTTTATTTAAATTCGGTTGTTG
GATTTTTATTTCAATTTTAACATGTTGTGATGATAGCTTACTTTCAGGGG
AGAGGCCGAGAATTTTGTTTTTGAAATTTCCATTTAGTTTATTAATAAAT
CCTAGGATCTGTGAGGAACATCAGGAAGGA
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