CX288933 | Citrus Genome Database

Overview


Name	CX288933
Unique Name	CX288933
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	624

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig161	contig	Ccv1_Contig161:1..624.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX288933 vs. ExPASy Swiss-Prot
Match: SPG21_BOVIN (Maspardin OS=Bos taurus GN=SPG21 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.622e-31
Identity = 77/176 (43.75%), Postives = 105/176 (59.66%), Query Frame = 3

Query:  114 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEP 620
            G      D+  F+S VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N+F DT  F     W     W  PSF+LK+ VL     GP +P
Sbjct:    2 GEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRNIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTASSFWLMPSFMLKKIVLGNFSSGPVDP 175

[Close]

BLAST of CX288933 vs. ExPASy Swiss-Prot
Match: SPG21_RAT (Maspardin OS=Rattus norvegicus GN=Spg21 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.964e-31
Identity = 76/176 (43.18%), Postives = 104/176 (59.09%), Query Frame = 3

Query:  114 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEP 620
            G      D+  F+S VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N F DT  F     W     W  P+F+LK+ VL     GP +P
Sbjct:    2 GEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFQQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNAFSDTSIF--NQTWTANSFWLMPAFMLKKIVLGNFSSGPVDP 175

[Close]

BLAST of CX288933 vs. ExPASy Swiss-Prot
Match: SPG21_MOUSE (Maspardin OS=Mus musculus GN=Spg21 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.964e-31
Identity = 76/176 (43.18%), Postives = 104/176 (59.09%), Query Frame = 3

Query:  114 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEP 620
            G      D+  F+S VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N F DT  F     W     W  P+F+LK+ VL     GP +P
Sbjct:    2 GEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFQQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNAFSDTSIF--NQTWTANSFWLMPAFMLKKIVLGNFSSGPVDP 175

[Close]

BLAST of CX288933 vs. ExPASy Swiss-Prot
Match: SPG21_PONAB (Maspardin OS=Pongo abelii GN=SPG21 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.700e-30
Identity = 75/176 (42.61%), Postives = 104/176 (59.09%), Query Frame = 3

Query:  114 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEP 620
            G      D+  F+  VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N+F DT  F     W     W  P+F+LK+ VL     GP +P
Sbjct:    2 GEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTANSFWLMPAFMLKKIVLGNFSSGPVDP 175

[Close]

BLAST of CX288933 vs. ExPASy Swiss-Prot
Match: SPG21_HUMAN (Maspardin OS=Homo sapiens GN=SPG21 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.700e-30
Identity = 75/176 (42.61%), Postives = 104/176 (59.09%), Query Frame = 3

Query:  114 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEP 620
            G      D+  F+  VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N+F DT  F     W     W  P+F+LK+ VL     GP +P
Sbjct:    2 GEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTANSFWLMPAFMLKKIVLGNFSSGPVDP 175

[Close]

BLAST of CX288933 vs. ExPASy Swiss-Prot
Match: SPG21_MACFA (Maspardin OS=Macaca fascicularis GN=SPG21 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.220e-30
Identity = 74/169 (43.79%), Postives = 103/169 (60.95%), Query Frame = 3

Query:  135 DFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEP 620
            D+  F+  VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N+F DT  F     W     W  P+F+LK+ VL     GP +P
Sbjct:    9 DYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTANSFWLMPAFMLKKIVLGNFSSGPVDP 175

[Close]

BLAST of CX288933 vs. ExPASy Swiss-Prot
Match: SPG21_XENLA (Maspardin OS=Xenopus laevis GN=spg21 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.945e-30
Identity = 74/176 (42.05%), Postives = 105/176 (59.66%), Query Frame = 3

Query:  114 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEP 620
            G      D+  F+S VPL +I +    +K W  YD GP+ V  P+I LP  +GTA+V++ QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV+SL+L N+F DT  F     W     W  P+F+LK+ +L     GP +P
Sbjct:    2 GAIKISPDYNWFRSTVPLKRIIVDDDDSKVWSLYDAGPRSVRCPIIYLPPVSGTADVFFHQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDDLHLDKVHLFGASLGGFLAQKFAEYTHKSPRVQSLILCNSFSDTSIF--NQTWTANSFWLMPAFMLKKILLGNFSSGPVDP 175

[Close]

BLAST of CX288933 vs. ExPASy Swiss-Prot
Match: SPG21_DANRE (Maspardin OS=Danio rerio GN=spg21 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.435e-30
Identity = 76/169 (44.97%), Postives = 103/169 (60.95%), Query Frame = 3

Query:  135 DFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGIHDGPHEP 620
            D+  F+S VPL +I +    +K W  YD GPK +  P+I LP  +GTAEV+++Q++ALS  GYRVIS+  P  W+  E+   F K LD + +  +HL+G SLGGFLAQ FA+  ++  RV SLVL N+F DT  F     W     W  PSF+LK+ VL     GP +P
Sbjct:    9 DYNWFRSTVPLKRIIVDDDDSKVWSLYDAGPKSIRCPIIFLPPVSGTAEVFFQQVLALSGWGYRVISLQYPVYWDLLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEVTYKSPRVHSLVLCNSFSDTSIF--NQTWTANSFWLMPSFMLKKIVLGNFAKGPVDP 175

The following BLAST results are available for this feature:

BLAST of CX288933 vs. ExPASy Swiss-Prot

BLAST of CX288933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8


Match Name	E-value	Identity	Description
SPG21_BOVIN	2.622e-31	43.75	Maspardin OS=Bos taurus GN=SPG21 PE=2 SV=1	[more]
SPG21_RAT	9.964e-31	43.18	Maspardin OS=Rattus norvegicus GN=Spg21 PE=2 SV=1	[more]
SPG21_MOUSE	9.964e-31	43.18	Maspardin OS=Mus musculus GN=Spg21 PE=1 SV=1	[more]
SPG21_PONAB	1.700e-30	42.61	Maspardin OS=Pongo abelii GN=SPG21 PE=2 SV=1	[more]
SPG21_HUMAN	1.700e-30	42.61	Maspardin OS=Homo sapiens GN=SPG21 PE=1 SV=1	[more]
SPG21_MACFA	2.220e-30	43.79	Maspardin OS=Macaca fascicularis GN=SPG21 PE=2 SV=...	[more]
SPG21_XENLA	4.945e-30	42.05	Maspardin OS=Xenopus laevis GN=spg21 PE=2 SV=1	[more]
SPG21_DANRE	8.435e-30	44.97	Maspardin OS=Danio rerio GN=spg21 PE=2 SV=1	[more]

Properties


Property Name	Value
Genbank description	C02007A12SK IF1 Citrus clementina cDNA clone C02007A12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX288933 ID=CX288933; Name=CX288933; organism=Citrus clementina; type=EST; length=624bp
ATTGAATGATTGATCAATCTTTTATAAGATTGGAATAATCGATTTTTATT
TTTTTTTGAAAAGGGAATAATCGAATTTGAATGCATGTGTAGGCTCAAAA
GTCGACAATGAAAGGCGTCTTCTCGGCGCCCGGAGATTTTGTCCACTTCA
AGTCTCAGGTCCCTCTTTACAAGATCCCTATTGGCACAAAGCAGTGGCGA
TATTATGATTTTGGCCCAAAAGTAGTTCCTCCACTTATTTGTCTTCCTGG
AACGGCAGGGACAGCAGAAGTCTACTACAAGCAGATCATGGCTTTGTCCA
TGAAGGGTTACCGGGTGATTTCTGTTGATATTCCACGTGTATGGAATCAT
CATGAGTGGATTCAAGCATTTGAAAAATTCCTTGATGCCATTGATGTTCA
TCATATACACCTTTACGGCACATCACTTGGAGGCTTCCTAGCACAACTTT
TTGCTCAGCATCGCCCAAGACGAGTTAGATCATTAGTCTTATCAAATACA
TTTTTGGATACGCATAGTTTCGCAGCTGCAATGCCATGGGCTCCCATTGT
TAGTTGGACACCTTCTTTTTTGCTTAAACGATACGTCTTAACAGGAATTC
ATGATGGCCCTCATGAACCATTTA