CX288934

Overview
NameCX288934
Unique NameCX288934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288934 vs. ExPASy Swiss-Prot
Match: BPL1_MOUSE (Biotin--protein ligase OS=Mus musculus GN=Hlcs PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.213e-22
Identity = 64/203 (31.53%), Postives = 105/203 (51.72%), Query Frame = 2
Query:   17 SPKGC----LMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGI-KVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVL----RKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHP 598
            SP GC    L+    ++ + G+ +P +Q++ SLA+ EA+  +    G   +++++KWPND+Y + + K+GG+L  ST   + F + IG G NV N  PT C+N ++    ++        R + +IA      E   D F +QG   +  LYYK W+H GQ+V +      Q      +I GL  SG+L    +D  +  +HP
Sbjct:  511 SPVGCALSTLLVFIPLRSQLGQRIPFVQHLMSLAVVEAVRSI---PGYEDINLRVKWPNDIYYSDLMKIGGVLVNSTLMGETFYILIGCGFNVTNSNPTICINDLIEEHNKQHGAGLKPLRADCLIARAVTVLEKLIDRFQDQGPDGVLPLYYKYWVHGGQQVRLGSTEGPQ-----ASIVGLDDSGFLQVHQEDGGVVTVHP 705          
BLAST of CX288934 vs. ExPASy Swiss-Prot
Match: BPL1_HUMAN (Biotin--protein ligase OS=Homo sapiens GN=HLCS PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.752e-21
Identity = 60/203 (29.56%), Postives = 107/203 (52.71%), Query Frame = 2
Query:   17 SPKGC----LMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGI-KVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSD----STYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHP 598
            SP GC    L+ S  ++ + G+ +P +Q++ S+A+ EA+  +     +   ++++KWPND+Y + + K+GG+L  ST   + F + IG G NV N  PT C+N ++ + +          R + +IA      E     F ++G  ++  LYY+ W+HSGQ+V +      +     V+I GL  SG+L    +  ++  +HP
Sbjct:  515 SPVGCALSTLLISIPLRSQLGQRIPFVQHLMSVAVVEAVRSIPEYQDI---NLRVKWPNDIYYSDLMKIGGVLVNSTLMGETFYILIGCGFNVTNSNPTICINDLITEYNKQHKAELKPLRADYLIARVVTVLEKLIKEFQDKGPNSVLPLYYRYWVHSGQQVHLGSAEGPK-----VSIVGLDDSGFLQVHQEGGEVVTVHP 709          
BLAST of CX288934 vs. ExPASy Swiss-Prot
Match: BPL1_SCHPO (Biotin--protein ligase OS=Schizosaccharomyces pombe GN=bpl1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.138e-19
Identity = 68/205 (33.17%), Postives = 104/205 (50.73%), Query Frame = 2
Query:   17 SPKGCLMFSFTIQMEDGRV----VPLLQYVASLALTEAIN-YVCSRDGLPCLDIKIKWPNDLYLN----GI--------KVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVL---RKLSDSTY--QFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSS-GYLLA 562
            SP G L FSF I ++        + L QY+ +LA+   I  Y    + +P     IKWPND+Y+     GI        K+ GI+ TS YR    ++ +G G+NV+N  PT  LN ++    K SD+    +F  E ++A+  N+F+ ++   + +GF  +   YY+ WLHS Q V +    +         IQG+TS  G+LLA
Sbjct:  403 SPYGTLAFSFIINVDAKNFSTTPIALFQYLMALAVVRGIREYAPGYENIPAF---IKWPNDVYVRVDKGGINFQGKQYMKLSGIIVTSNYRKNVLHLVVGCGINVSNLGPTVSLNTLVDEWNKNSDNPRLEKFSFEKLLASVLNQFDRYHRLLLEEGFSLILPEYYQYWLHSNQTVNLASGGK-------AIIQGITSDFGFLLA 597          
BLAST of CX288934 vs. ExPASy Swiss-Prot
Match: BPL1_YEAST (Biotin--protein ligase OS=Saccharomyces cerevisiae GN=BPL1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 52/202 (25.74%), Postives = 85/202 (42.08%), Query Frame = 2
Query:   74 VPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNG------------------------------IKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQF--------RREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSS-GYLLA 562
            V  +QY++ LA  +AI  +    G   + ++IKWPNDLY                                 +K+ G+L  + +   K+ + +G G+N+ ++ PTT L   +  L++   Q         + E + A + N  E     FIN G   +   YY+ WLHS Q V + +    Q +     I G+T   G L+A
Sbjct:  458 VVFVQYLSMLAYCKAI--LSYAPGFSDIPVRIKWPNDLYALSPTYYKRKNLKLVNTGFEHTKLPLGDIEPAYLKISGLLVNTHFINNKYCLLLGCGINLTSDGPTTSLQTWIDILNEERQQLHLDLLPAIKAEKLQALYMNNLEVILKQFINYGAAEILPSYYELWLHSNQIVTLPDHGNTQAM-----ITGITEDYGLLIA 652          
The following BLAST results are available for this feature:
BLAST of CX288934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
BPL1_MOUSE1.213e-2231.53Biotin--protein ligase OS=Mus musculus GN=Hlcs PE=... [more]
BPL1_HUMAN1.752e-2129.56Biotin--protein ligase OS=Homo sapiens GN=HLCS PE=... [more]
BPL1_SCHPO8.138e-1933.17Biotin--protein ligase OS=Schizosaccharomyces pomb... [more]
BPL1_YEAST4.782e-1125.74Biotin--protein ligase OS=Saccharomyces cerevisiae... [more]
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Properties
Property NameValue
Genbank descriptionC02007B02SK IF1 Citrus clementina cDNA clone C02007B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288934 ID=CX288934; Name=CX288934; organism=Citrus clementina; type=EST; length=599bp
AATTCGGCACGAGGAGTCTCCAAAGGGCTGCCTTATGTTTTCTTTTACCA
TACAAATGGAGGACGGTCGTGTCGTGCCTTTGTTACAATATGTGGCATCC
CTTGCATTAACAGAGGCAATTAACTATGTTTGCAGCAGAGATGGACTACC
ATGTCTTGACATTAAAATAAAGTGGCCAAATGATCTGTACCTAAATGGGA
TTAAAGTTGGAGGCATTTTGTGCACCTCAACTTATAGAACTAAGAAGTTC
AATGTCAGTATTGGTATAGGTTTGAACGTTAATAATGAGGAACCAACAAC
ATGCTTGAATGCAGTTCTAAGAAAGTTGTCTGATTCTACTTACCAATTTC
GAAGAGAAGATGTTATTGCAGCCTTTTTTAATAAATTTGAGACCTTTTAT
GATACTTTTATAAATCAAGGATTTCAAACTCTCGAGGAGCTATATTACAA
GACTTGGCTACACAGCGGACAGAGAGTAATCGTACAGGAGAAAAATGAGG
ACCAAGTGGTAGAAAATGTGGTGACTATTCAGGGGTTGACATCATCGGGG
TATTTGTTAGCTATTGGAGATGACAATCAAATGTGCGAGCTTCACCCTG
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