CX288942
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 4.937e-71 Identity = 132/137 (96.35%), Postives = 134/137 (97.81%), Query Frame = 2 Query: 2 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412 KFAFVEMRSVEEASNAMALDGIIFEGAP KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL+PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQD+SVTDI AALNGI Sbjct: 287 KFAFVEMRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGI 423
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2) HSP 1 Score: 264.618 bits (675), Expect = 1.100e-70 Identity = 130/137 (94.89%), Postives = 134/137 (97.81%), Query Frame = 2 Query: 2 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412 KFAFVEMRSVEEASNAMALDGI+FEGAPVKVRRP+DYNPSLAA LGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL+VTDI AALNGI Sbjct: 286 KFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGI 422
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2) HSP 1 Score: 263.077 bits (671), Expect = 3.200e-70 Identity = 129/137 (94.16%), Postives = 134/137 (97.81%), Query Frame = 2 Query: 2 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412 KFAFVEMRSVEEASNAMALDGI+FEGAPVKVRRP+DYNPSLAA LGPSQP+PNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL+VTDI AALNGI Sbjct: 262 KFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGI 398
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 2.709e-69 Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 2 Query: 2 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412 KFAFVEMRSVEEASNAMALDGI+FEGAPVKVRRP+DYNPSLAA LGPSQP+ NLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL+VTDI AALNGI Sbjct: 255 KFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGI 391
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1) HSP 1 Score: 257.684 bits (657), Expect = 1.344e-68 Identity = 127/137 (92.70%), Postives = 132/137 (96.35%), Query Frame = 2 Query: 2 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412 KFAFVEMRSVEEASNAMALDG+IFEG PVKVRRPSDYNPSLAATLGPSQP+PNLNLAAVG TPGS+GGLEGPDRIFVGGLPYYFTE+QIRELLESFG LRGFDLVKDRETGNSKGYAFCVYQD+SVTDI AALNGI Sbjct: 269 KFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGI 405
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2) HSP 1 Score: 256.914 bits (655), Expect = 2.293e-68 Identity = 126/137 (91.97%), Postives = 134/137 (97.81%), Query Frame = 2 Query: 2 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412 KFAFVEMRSVEEASNAM+LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQP+P+LNLAAVGLTPG++GGLEGPDRIFVGGLPYYFTE+Q+RELLESFG L+GFDLVKDRETGNSKGYAFCVYQDLSVTDI AALNGI Sbjct: 287 KFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI 423
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2) HSP 1 Score: 251.521 bits (641), Expect = 9.635e-67 Identity = 125/137 (91.24%), Postives = 128/137 (93.43%), Query Frame = 2 Query: 2 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412 KFAFVEMRSVEEASNAMALDGII EG PVKVRRP+DYNPSLAATLGPSQPNPNLNL AVGL+ GS GGLEGPDRIFVGGLPYYFTE QIRELLESFGPLRGF+LVKDRETGNSKGYAFCVYQD SVTDI AALNGI Sbjct: 303 KFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGI 439
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2A2A_WHEAT (Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 1.643e-66 Identity = 121/137 (88.32%), Postives = 131/137 (95.62%), Query Frame = 2 Query: 2 KFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412 KFAFVEMRSVEEASNAMALDGI+FEGAPVKVRRP+DYNPS AA LGPSQPNPNLNLAAVGLTPG+ GGLEGPDRIFVGGLPYYFTEAQ+RELLE+FGPLRGFD+VKD+ETGNSKGYAFC+Y+D +VTDI AALNGI Sbjct: 320 KFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNLNLAAVGLTPGAGGGLEGPDRIFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLYKDGTVTDIACAALNGI 456
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2AF2_MOUSE (Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3) HSP 1 Score: 129.028 bits (323), Expect = 7.212e-30 Identity = 69/136 (50.74%), Postives = 88/136 (64.71%), Query Frame = 2 Query: 5 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412 FAF+E RSV+E + AMA DGIIF+G +K+RRP DY P + PS P + V P SA ++F+GGLP Y + Q++ELL SFGPL+ F+LVKD TG SKGYAFC Y D++VTD A LNG+ Sbjct: 197 FAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVV---PDSA------HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM 323
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2AF2_HUMAN (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4) HSP 1 Score: 129.028 bits (323), Expect = 7.212e-30 Identity = 69/136 (50.74%), Postives = 88/136 (64.71%), Query Frame = 2 Query: 5 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412 FAF+E RSV+E + AMA DGIIF+G +K+RRP DY P + PS P + V P SA ++F+GGLP Y + Q++ELL SFGPL+ F+LVKD TG SKGYAFC Y D++VTD A LNG+ Sbjct: 197 FAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVV---PDSA------HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM 323 The following BLAST results are available for this feature:
BLAST of CX288942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288942 ID=CX288942; Name=CX288942; organism=Citrus clementina; type=EST; length=413bpback to top |