CX288951

Overview
NameCX288951
Unique NameCX288951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288951 vs. ExPASy Swiss-Prot
Match: RFA2_RAT (Replication protein A 32 kDa subunit OS=Rattus norvegicus GN=Rpa2 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.287e-17
Identity = 54/174 (31.03%), Postives = 96/174 (55.17%), Query Frame = 3
Query:   39 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKS 551
            E FSSS + A+  +  S GGF    P Q+       +R+R +Q +VP T+  +  A+ + +    F I  +EI+ VT+VG++ + E+  +++ + +DD T   +  ++W      + E   +    YV++ G+L+SFQ KK +VAF + P+ + +E T H +E +  HL  SK+
Sbjct:    7 ESFSSSSYGAAGGYTQSPGGFGSPTPSQA----EKKSRAR-AQHIVPCTISQLLSATLTDEV---FKIGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSGENTVVPPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHLMLSKA 172          
BLAST of CX288951 vs. ExPASy Swiss-Prot
Match: RFA2_SCHPO (Replication factor A protein 2 OS=Schizosaccharomyces pombe GN=ssb2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.041e-15
Identity = 55/171 (32.16%), Postives = 86/171 (50.29%), Query Frame = 3
Query:   24 GPGFSEMFSSSQFDASNAFSGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHL 536
            GP F+  FS           GGG   ++  QS+  PS   +      L PVT+K I  AS    D + F I+G+E+  VT VG++ N   + ++  + ++DGTG +  + W  E  D   +  +    YVR+ GN+K F GK  I +  +R + + +EV  H++E I  HL
Sbjct:   12 GPDFNSAFSPGM--------GGGAGFNEYDQSSQ-PSVDRQQGAGNKLRPVTIKQILNASQVHAD-AEFKIDGVEVGQVTFVGVLRNIHAQTTNTTYQIEDGTGMIEVRHW--EHIDA--LSELATDTYVRVYGNIKIFSGKIYIASQYIRTIKDHNEVHFHFLEAIAVHL 168          
BLAST of CX288951 vs. ExPASy Swiss-Prot
Match: RFA2_HUMAN (Replication protein A 32 kDa subunit OS=Homo sapiens GN=RPA2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.482e-15
Identity = 51/174 (29.31%), Postives = 93/174 (53.45%), Query Frame = 3
Query:   39 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKS 551
            E + SS +  +  +  S GGF    P Q+       +R+R +Q +VP T+  +  A+   +    F I  +EI+ VT+VG++ + E+  +++ + +DD T   +  ++W      + E   +    YV++ G+L+SFQ KK +VAF + P+ + +E T H +E I  H+  SK+
Sbjct:    7 ESYGSSSYGGAGGYTQSPGGFGSPAPSQA----EKKSRAR-AQHIVPCTISQLLSATLVDEV---FRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKA 172          
BLAST of CX288951 vs. ExPASy Swiss-Prot
Match: RFA2_PONAB (Replication protein A 32 kDa subunit OS=Pongo abelii GN=RPA2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.547e-15
Identity = 51/174 (29.31%), Postives = 93/174 (53.45%), Query Frame = 3
Query:   39 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKS 551
            E + SS +  +  +  S GGF    P Q+       +R+R +Q +VP T+  +  A+   +    F I  +EI+ VT+VG++ + E+  +++ + +DD T   +  ++W      + E   +    YV++ G+L+SFQ KK +VAF + P+ + +E T H +E I  H+  SK+
Sbjct:    7 ESYGSSSYGGAGGYTQSPGGFGSPAPSQA----EKKSRAR-AQHIVPCTISQLLSATLVDEV---FRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDASSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKA 172          
BLAST of CX288951 vs. ExPASy Swiss-Prot
Match: RFA2_YEAST (Replication factor A protein 2 OS=Saccharomyces cerevisiae GN=RFA2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.756e-15
Identity = 50/179 (27.93%), Postives = 93/179 (51.96%), Query Frame = 3
Query:   42 MFSSSQFDASNAFSGGGFMPSQP-PQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFD--------------TREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFH 533
            M +   ++  ++ +GGGF  S+  P S +  ++T  +     L PVT+K I E+     D   F+ +  E+ +V  VG+V N  +  +++  T++DGTG++  ++W+ +  D              ++  +  + G YV++ G LK F GKK I    ++P+ +F+EV  H++E I  H
Sbjct:    1 MATYQPYNEYSSVTGGGFENSESRPGSGESETNTRVNT----LTPVTIKQILESKQDIQD-GPFVSHNQELHHVCFVGVVRNITDHTANIFLTIEDGTGQIEVRKWSEDANDLAAGNDDSSGKGYGSQVAQQFEIGGYVKVFGALKEFGGKKNIQYAVIKPIDSFNEVLTHHLEVIKCH 174          
BLAST of CX288951 vs. ExPASy Swiss-Prot
Match: RFA2_MOUSE (Replication protein A 32 kDa subunit OS=Mus musculus GN=Rpa2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.013e-14
Identity = 51/173 (29.48%), Postives = 92/173 (53.18%), Query Frame = 3
Query:   39 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSK 548
            E F+SS +     +  S GGF    P Q+       +R R +Q +VP T+  +  A+ + +    F I  +EI+ VT+VG++ + E+  +++ + +DD T   +  ++W      + E   +    YV++ G+L+SFQ KK +VAF + P+ + +E T H +E +  H+  SK
Sbjct:    7 ESFTSSTYGGRGGYTQSPGGFGSPTPSQA----EKKSRVR-AQHIVPCTISQLLSATLTDEV---FRIGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAPPMDVRQWVDTDDASGENAVVPPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHMMLSK 171          
The following BLAST results are available for this feature:
BLAST of CX288951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RFA2_RAT8.287e-1731.03Replication protein A 32 kDa subunit OS=Rattus nor... [more]
RFA2_SCHPO2.041e-1532.16Replication factor A protein 2 OS=Schizosaccharomy... [more]
RFA2_HUMAN3.482e-1529.31Replication protein A 32 kDa subunit OS=Homo sapie... [more]
RFA2_PONAB4.547e-1529.31Replication protein A 32 kDa subunit OS=Pongo abel... [more]
RFA2_YEAST7.756e-1527.93Replication factor A protein 2 OS=Saccharomyces ce... [more]
RFA2_MOUSE1.013e-1429.48Replication protein A 32 kDa subunit OS=Mus muscul... [more]
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Properties
Property NameValue
Genbank descriptionC02007C08SK IF1 Citrus clementina cDNA clone C02007C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288951 ID=CX288951; Name=CX288951; organism=Citrus clementina; type=EST; length=552bp
AACTGTCAATTCTTTAATTTTAAGGTCCAGGGTTTTCAGAGATGTTTTCG
AGTAGCCAATTCGACGCCAGCAATGCATTTTCCGGCGGCGGATTCATGCC
TTCTCAGCCGCCTCAGTCCGCCGATTATCCTTCTTCTACGGCAAGAAGTC
GTGATTCTCAAGGGTTAGTACCAGTGACAGTGAAGATGATAAGTGAAGCT
TCCCACTCTGGTGATGATAAATCGAATTTTATGATCAATGGTTTGGAGAT
TACTAATGTTACATTGGTTGGGCTGGTGTATAACAAAGAAGAAAGAGCTT
CTGATGTTAATTTCACTCTAGACGATGGAACCGGGAGAGTTGTATGTAAA
AGATGGGCAAGTGAGGTTTTTGACACCAGGGAAATGGAGGCCATACAAGA
TGGAATGTACGTACGTCTCATTGGGAACTTGAAAAGCTTTCAAGGGAAAA
AACAGATTGTTGCCTTCTCTGTGAGGCCAGTGACAAACTTTGATGAGGTT
ACTTGCCACTATATTGAATGCATATACTTTCACTTGCAAAATTCCAAGTC
AC
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