CX288951
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288951 vs. ExPASy Swiss-Prot
Match: RFA2_RAT (Replication protein A 32 kDa subunit OS=Rattus norvegicus GN=Rpa2 PE=2 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 8.287e-17 Identity = 54/174 (31.03%), Postives = 96/174 (55.17%), Query Frame = 3 Query: 39 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKS 551 E FSSS + A+ + S GGF P Q+ +R+R +Q +VP T+ + A+ + + F I +EI+ VT+VG++ + E+ +++ + +DD T + ++W + E + YV++ G+L+SFQ KK +VAF + P+ + +E T H +E + HL SK+ Sbjct: 7 ESFSSSSYGAAGGYTQSPGGFGSPTPSQA----EKKSRAR-AQHIVPCTISQLLSATLTDEV---FKIGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSGENTVVPPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHLMLSKA 172
BLAST of CX288951 vs. ExPASy Swiss-Prot
Match: RFA2_SCHPO (Replication factor A protein 2 OS=Schizosaccharomyces pombe GN=ssb2 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.041e-15 Identity = 55/171 (32.16%), Postives = 86/171 (50.29%), Query Frame = 3 Query: 24 GPGFSEMFSSSQFDASNAFSGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHL 536 GP F+ FS GGG ++ QS+ PS + L PVT+K I AS D + F I+G+E+ VT VG++ N + ++ + ++DGTG + + W E D + + YVR+ GN+K F GK I + +R + + +EV H++E I HL Sbjct: 12 GPDFNSAFSPGM--------GGGAGFNEYDQSSQ-PSVDRQQGAGNKLRPVTIKQILNASQVHAD-AEFKIDGVEVGQVTFVGVLRNIHAQTTNTTYQIEDGTGMIEVRHW--EHIDA--LSELATDTYVRVYGNIKIFSGKIYIASQYIRTIKDHNEVHFHFLEAIAVHL 168
BLAST of CX288951 vs. ExPASy Swiss-Prot
Match: RFA2_HUMAN (Replication protein A 32 kDa subunit OS=Homo sapiens GN=RPA2 PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.482e-15 Identity = 51/174 (29.31%), Postives = 93/174 (53.45%), Query Frame = 3 Query: 39 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKS 551 E + SS + + + S GGF P Q+ +R+R +Q +VP T+ + A+ + F I +EI+ VT+VG++ + E+ +++ + +DD T + ++W + E + YV++ G+L+SFQ KK +VAF + P+ + +E T H +E I H+ SK+ Sbjct: 7 ESYGSSSYGGAGGYTQSPGGFGSPAPSQA----EKKSRAR-AQHIVPCTISQLLSATLVDEV---FRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKA 172
BLAST of CX288951 vs. ExPASy Swiss-Prot
Match: RFA2_PONAB (Replication protein A 32 kDa subunit OS=Pongo abelii GN=RPA2 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.547e-15 Identity = 51/174 (29.31%), Postives = 93/174 (53.45%), Query Frame = 3 Query: 39 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKS 551 E + SS + + + S GGF P Q+ +R+R +Q +VP T+ + A+ + F I +EI+ VT+VG++ + E+ +++ + +DD T + ++W + E + YV++ G+L+SFQ KK +VAF + P+ + +E T H +E I H+ SK+ Sbjct: 7 ESYGSSSYGGAGGYTQSPGGFGSPAPSQA----EKKSRAR-AQHIVPCTISQLLSATLVDEV---FRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDASSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKA 172
BLAST of CX288951 vs. ExPASy Swiss-Prot
Match: RFA2_YEAST (Replication factor A protein 2 OS=Saccharomyces cerevisiae GN=RFA2 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.756e-15 Identity = 50/179 (27.93%), Postives = 93/179 (51.96%), Query Frame = 3 Query: 42 MFSSSQFDASNAFSGGGFMPSQP-PQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFD--------------TREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFH 533 M + ++ ++ +GGGF S+ P S + ++T + L PVT+K I E+ D F+ + E+ +V VG+V N + +++ T++DGTG++ ++W+ + D ++ + + G YV++ G LK F GKK I ++P+ +F+EV H++E I H Sbjct: 1 MATYQPYNEYSSVTGGGFENSESRPGSGESETNTRVNT----LTPVTIKQILESKQDIQD-GPFVSHNQELHHVCFVGVVRNITDHTANIFLTIEDGTGQIEVRKWSEDANDLAAGNDDSSGKGYGSQVAQQFEIGGYVKVFGALKEFGGKKNIQYAVIKPIDSFNEVLTHHLEVIKCH 174
BLAST of CX288951 vs. ExPASy Swiss-Prot
Match: RFA2_MOUSE (Replication protein A 32 kDa subunit OS=Mus musculus GN=Rpa2 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.013e-14 Identity = 51/173 (29.48%), Postives = 92/173 (53.18%), Query Frame = 3 Query: 39 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSK 548 E F+SS + + S GGF P Q+ +R R +Q +VP T+ + A+ + + F I +EI+ VT+VG++ + E+ +++ + +DD T + ++W + E + YV++ G+L+SFQ KK +VAF + P+ + +E T H +E + H+ SK Sbjct: 7 ESFTSSTYGGRGGYTQSPGGFGSPTPSQA----EKKSRVR-AQHIVPCTISQLLSATLTDEV---FRIGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAPPMDVRQWVDTDDASGENAVVPPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHMMLSK 171 The following BLAST results are available for this feature:
BLAST of CX288951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288951 ID=CX288951; Name=CX288951; organism=Citrus clementina; type=EST; length=552bpback to top |