CX288958

Overview
NameCX288958
Unique NameCX288958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288958_ssr59 microsatellite CX288958_ssr59:59..82. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig163 contig Ccv1_Contig163:1..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288958 vs. ExPASy Swiss-Prot
Match: NTF2_ARATH (Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 3.957e-55
Identity = 101/119 (84.87%), Postives = 110/119 (92.44%), Query Frame = 1
Query:  163 NQMDPDSVAKAFVEHYYTTFDANRTGLANLYQEGTMLTFEGQKIQGSQNIVAKLTSLPLQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 519
            +QMDPD+V+KAFVEHYY+TFD NR GLA LYQE +MLTFEGQKIQG Q+IVAKLTSLP QQC+H I+TVDCQPSGPA GMLVFVSGNLQLAGE+HALKFSQMFHLMPTPQGSFYV NDI
Sbjct:    2 SQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDI 120          
BLAST of CX288958 vs. ExPASy Swiss-Prot
Match: NTF2_ORYSJ (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.365e-38
Identity = 76/117 (64.96%), Postives = 89/117 (76.07%), Query Frame = 1
Query:  169 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGTMLTFEGQKIQGSQNIVAKLTSLPLQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 519
            MD D+VAKAFVEHYY TFD NR  L +LYQ+G+MLTFEGQ+  G+  I  KL SLP  QC H I TVDCQPSGP GGMLVFVSG+L+   ++H LKFSQMF L+P   G+FYV ND+
Sbjct:    1 MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDM 116          
BLAST of CX288958 vs. ExPASy Swiss-Prot
Match: NTF2_EMENI (Nuclear transport factor 2 OS=Emericella nidulans GN=ntf2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.157e-28
Identity = 60/116 (51.72%), Postives = 81/116 (69.83%), Query Frame = 1
Query:  172 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGTMLTFEGQKIQGSQNIVAKLTSLPLQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 519
            D  S+A+ FV  YY TFD NR GLA LY++ +MLTFE   IQG   I+ KLTSLP Q+ QH ++T+D QPSG  GG+LV V+G L +  E++ + ++Q F LMP   GS++VLND+
Sbjct:    3 DFQSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETSAIQGVAGIIEKLTSLPFQKVQHQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDV 118          
BLAST of CX288958 vs. ExPASy Swiss-Prot
Match: NTF2_ASHGO (Nuclear transport factor 2 OS=Ashbya gossypii GN=NTF2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.385e-28
Identity = 60/117 (51.28%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  169 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGTMLTFEGQKIQGSQNIVAKLTSLPLQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 519
            MD  ++A+ F E YY  FD +R+ L NLY++ +MLTFE  ++QG+++IV KL SLP Q+ QH ITT+D QP+ P G +LV ++G+L +  EQ+A +FSQ+FHLMP    S+YV NDI
Sbjct:    3 MDFSALAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMP-EGNSYYVFNDI 118          
BLAST of CX288958 vs. ExPASy Swiss-Prot
Match: NTF2_KLULA (Nuclear transport factor 2 OS=Kluyveromyces lactis GN=NTF2 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.491e-27
Identity = 60/117 (51.28%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  169 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGTMLTFEGQKIQGSQNIVAKLTSLPLQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 519
            +D  S+A+ F E YY  FD++RT L NLY+E +MLTFE  ++QG+++IV KL SLP Q+  H ITT+D QP+ P G +LV ++G+L +  EQ+  +FSQ+FHLMP    S+YV NDI
Sbjct:    3 VDFSSLAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMP-EGSSYYVYNDI 118          
BLAST of CX288958 vs. ExPASy Swiss-Prot
Match: NTF2_CANGA (Nuclear transport factor 2 OS=Candida glabrata GN=NTF2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.732e-26
Identity = 57/117 (48.72%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  169 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGTMLTFEGQKIQGSQNIVAKLTSLPLQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 519
            MD +++A+ F E YY  FD++R+ L NLY++ +MLTFE  ++QG+++IV KL SLP Q+  H ITT+D QP+ P G +LV ++G+L +  EQ+  +FSQ+FHL+P    S+YV NDI
Sbjct:    3 MDFNALAQQFTEFYYNQFDSDRSQLGNLYRDESMLTFETSQLQGAKSIVEKLVSLPFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQVFHLIP-DGNSYYVFNDI 118          
BLAST of CX288958 vs. ExPASy Swiss-Prot
Match: NTF2_YEAST (Nuclear transport factor 2 OS=Saccharomyces cerevisiae GN=NTF2 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 6.583e-26
Identity = 56/117 (47.86%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  169 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGTMLTFEGQKIQGSQNIVAKLTSLPLQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 519
            +D +++A+ F + YY  FD +R+ L NLY+  +MLTFE  ++QG+++IV KL SLP Q+ QH ITT+D QP+ P G +LV ++G+L +  EQ+  +FSQ+FHL+P    S+YV NDI
Sbjct:    3 LDFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIP-DGNSYYVFNDI 118          
BLAST of CX288958 vs. ExPASy Swiss-Prot
Match: NTF2_SCHPO (Nuclear transport factor 2 OS=Schizosaccharomyces pombe GN=ntf2 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 6.583e-26
Identity = 56/116 (48.28%), Postives = 86/116 (74.14%), Query Frame = 1
Query:  172 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGTMLTFEGQKIQGSQNIVAKLTSLPLQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 519
            D +++A  F + YY TFD++R+ L++LY+E +ML+FEG ++QG++ IV KL SLP Q+ QH I+T+D QP+G  G ++V V+G L L  EQ A ++SQ+FHL+    G++YVLND+
Sbjct:    3 DYNALATQFTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRVQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV-NNNGNYYVLNDL 117          
BLAST of CX288958 vs. ExPASy Swiss-Prot
Match: NTF2_DEBHA (Nuclear transport factor 2 OS=Debaryomyces hansenii GN=NTF2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.598e-26
Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  169 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGTMLTFEGQKIQGSQNIVAKLTSLPLQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 519
            +D ++VA  F   YY  FD++RT L NLY+E +MLTFE  ++QG+++IV KL SLP Q+  H I+T+D QP  P G +LV V+G L +  EQ+A ++SQ+FHL+P    S+YV NDI
Sbjct:    3 VDFNTVASEFCNFYYQQFDSDRTQLGNLYREQSMLTFETSQLQGAKDIVEKLVSLPFQKVAHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIP-DGNSYYVFNDI 118          
BLAST of CX288958 vs. ExPASy Swiss-Prot
Match: NTF2_CANAL (Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.279e-25
Identity = 56/117 (47.86%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  169 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGTMLTFEGQKIQGSQNIVAKLTSLPLQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 519
            +D ++VA  F   YY  FD++R+ L NLY+  +MLTFE  ++QG+++IV KL SLP Q+  H I+T+D QP+   G +LV V+G L +  EQ+A ++SQ+FHL+P   GS+YV NDI
Sbjct:    3 VDFNAVATEFCNFYYNQFDSDRSQLGNLYRNESMLTFETSQLQGARDIVEKLASLPFQKVAHRISTLDAQPASANGDILVMVTGELLIDEEQNAQRYSQVFHLIP-DNGSYYVFNDI 118          
The following BLAST results are available for this feature:
BLAST of CX288958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NTF2_ARATH3.957e-5584.87Nuclear transport factor 2 OS=Arabidopsis thaliana... [more]
NTF2_ORYSJ3.365e-3864.96Nuclear transport factor 2 OS=Oryza sativa subsp. ... [more]
NTF2_EMENI3.157e-2851.72Nuclear transport factor 2 OS=Emericella nidulans ... [more]
NTF2_ASHGO5.385e-2851.28Nuclear transport factor 2 OS=Ashbya gossypii GN=N... [more]
NTF2_KLULA3.491e-2751.28Nuclear transport factor 2 OS=Kluyveromyces lactis... [more]
NTF2_CANGA1.732e-2648.72Nuclear transport factor 2 OS=Candida glabrata GN=... [more]
NTF2_YEAST6.583e-2647.86Nuclear transport factor 2 OS=Saccharomyces cerevi... [more]
NTF2_SCHPO6.583e-2648.28Nuclear transport factor 2 OS=Schizosaccharomyces ... [more]
NTF2_DEBHA8.598e-2649.57Nuclear transport factor 2 OS=Debaryomyces hanseni... [more]
NTF2_CANAL7.279e-2547.86Nuclear transport factor 2 OS=Candida albicans GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02007D05SK IF1 Citrus clementina cDNA clone C02007D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288958 ID=CX288958; Name=CX288958; organism=Citrus clementina; type=EST; length=521bp
GTTGATCTATTTTTACCTAAACCAAAACCCTCCAACTCCCAAACGAAATC
TGAGAGCGCTCTCTCTCTCTCTCTCTCTCTCTCGTTAGCGTGAGTCTCAA
GCGGAAACAGCAAACGCAAAATTCGAAAAGAGAGGCAGGGGTAGGAGGGG
ATTTTGAAATTCAATCAGATGGATCCAGACTCAGTGGCTAAAGCCTTCGT
TGAGCACTACTACACGACGTTTGATGCCAATCGCACGGGGCTCGCCAATC
TCTATCAGGAAGGTACAATGTTGACTTTTGAAGGTCAAAAAATCCAAGGC
TCGCAAAACATCGTCGCTAAGCTCACTAGCCTTCCCTTACAGCAGTGCCA
GCACTCCATCACCACCGTCGATTGCCAGCCCTCCGGTCCCGCTGGCGGCA
TGCTCGTTTTTGTCTCCGGTAATCTCCAACTCGCTGGTGAGCAGCACGCT
CTCAAGTTCAGCCAGATGTTCCATTTGATGCCAACACCTCAGGGAAGCTT
TTATGTGTTGAATGACATATT
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