CX288960

Overview
NameCX288960
Unique NameCX288960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 79/181 (43.65%), Postives = 110/181 (60.77%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALE---KILELALQCLAPRRQNRPSMRRCAEILWSVRKDYRELAASDVLLQPSYSKRSNS 535
            RD+KSSNILL  N RAKV+DFG +R    TE   THVS+  KGT GYLDPEY  + QLTEKSDVYSFGV+L EL++G++P+  +    E   V WA      GD   I+DP +    A+N+ +E   ++ E+A QC+  R  NRP M+   E++ +++   R    ++  L+ S S  S +
Sbjct:  730 RDVKSSNILLDINMRAKVSDFGLSR---QTEEDLTHVSSVAKGTVGYLDPEYYASQQLTEKSDVYSFGVVLFELLSGKKPVSAEDFGPELNIVHWARSLIRKGDVCGIIDPCI----ASNVKIESVWRVAEVANQCVEQRGHNRPRMQ---EVIVAIQDAIRIERGNENGLKSSSSSSSKA 900          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.353e-30
Identity = 74/158 (46.84%), Postives = 97/158 (61.39%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDG----DAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWSV 463
            RD+KS+NILL E+  AKVADFG ++L  D E    HV+TQVKGT GYLDPEY  T QLTEKSDVY FGV+++EL+TG+ PI+     +    VK   KK        D   +LD  +   + N    EK +++ALQC+ P   NRP+M    + L S+
Sbjct:  757 RDVKSNNILLDEHLTAKVADFGLSKLVGDPEKA--HVTTQVKGTMGYLDPEYYMTNQLTEKSDVYGFGVVMLELLTGKSPID-----RGSYVVKEVKKKMDKSRNLYDLQELLDTTIIQNSGNLKGFEKYVDVALQCVEPEGVNRPTMSEVVQELESI 907          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.767e-30
Identity = 72/144 (50.00%), Postives = 98/144 (68.06%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSM 433
            RD+KSSNILL ++  AKVADFGF++ A   + G ++VS +V+GTAGYLDPEY KT QL+EKSDV+SFGV+L+E+V+GR P+  KR   E   V+WA           I+DP ++    +  AL +++E+ALQCL P    RP M
Sbjct:  721 RDVKSSNILLDQSMCAKVADFGFSKYAP--QEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKPYIRASKVDEIVDPGIKG-GYHAEALWRVVEVALQCLEPYSTYRPCM 861          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.308e-30
Identity = 72/144 (50.00%), Postives = 97/144 (67.36%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSM 433
            RD+KSSNILL  +  AKVADFGF++ A   + G ++VS +V+GTAGYLDPEY KT QL+EKSDV+SFGV+L+E+V+GR P+  KR   E   V+WA           I+DP ++    +  AL +++E+ALQCL P    RP M
Sbjct:  720 RDVKSSNILLDHSMCAKVADFGFSKYAP--QEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRVEWSLVEWAKPYIRASKVDEIVDPGIKG-GYHAEALWRVVEVALQCLEPYSTYRPCM 860          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.352e-29
Identity = 70/154 (45.45%), Postives = 98/154 (63.64%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWSV 463
            RD+KS+NILL +NF AKVADFG ++   D +   THVST VKG+ GYLDPEYL   QLTEKSDVYSFGV+++E+V GR  I+P    ++   ++WAMK    G    I+DP +         ++K  E+  +CL+     RP+M    ++LW++
Sbjct:  611 RDVKSANILLDDNFMAKVADFGLSKTGPDLDQ--THVSTAVKGSFGYLDPEYLTRQQLTEKSDVYSFGVVMLEVVCGRPVIDPSLPREKVNLIEWAMKLVKKGKLEDIIDPFLVGKVKLE-EVKKYCEVTEKCLSQNGIERPAM---GDLLWNL 758          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: WAKLQ_ARATH (Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.352e-29
Identity = 70/154 (45.45%), Postives = 99/154 (64.29%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLA--ADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILE---LALQCLAPRRQNRPSMRRCAE 448
            RD+KSSNILL E   AKV+DFG +RL    +T +  +H+ T  +GT GYLDPEY + +QLT+KSDVYSFGV+L+E+VT ++ I+  RE ++   V +  K          +DP ++ T AN + ++ I +   LA  CL  RRQNRPSM+  A+
Sbjct:  489 RDVKSSNILLDEKLNAKVSDFGLSRLVDLTETANNESHIFTGAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLLEMVTSKKAIDFTREEEDVNLVMYINKMMDQERLTECIDPLLKKT-ANKIDMQTIQQLGNLASACLNERRQNRPSMKEVAD 641          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.696e-29
Identity = 67/153 (43.79%), Postives = 99/153 (64.71%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWS 460
            RDIK+SNIL+ + F AK++DFG A+L    +SG +H++T+V GT GY+ PEY  T  L EKSD+YSFGVLL+E +TGR P++  R   E   V+W         A  ++DPR+E   + + AL++ L ++L+C+ P  + RP M + A +L S
Sbjct:  308 RDIKASNILIDDEFNAKLSDFGLAKLL---DSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKMMVGTRRAEEVVDPRLEPRPSKS-ALKRALLVSLRCVDPEAEKRPRMSQVARMLES 456          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 9.696e-29
Identity = 81/186 (43.55%), Postives = 106/186 (56.99%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAA--DTES-GATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMR---RCAEILWSVRKDYRELAASDV---LLQPSYSKRSN 532
            RDIK+SNILL   F AKVADFG +RLA   D E     HVST VKGT GYLDPEY  T+QLT+KSDVYS GV+L+EL TG +PI   + +   I +      +  G  +S +D R+  ++  +  LEK   LAL+C       RPSM    R  EI+W +  +      +D+   +  PS S  S+
Sbjct:  748 RDIKASNILLDSRFTAKVADFGLSRLAPVPDMEGISPQHVSTVVKGTPGYLDPEYFLTHQLTDKSDVYSLGVVLLELFTGMQPITHGKNIVREINI-----AYESGSILSTVDKRM--SSVPDECLEKFATLALRCCREETDARPSMAEVVRELEIIWELMPESHVAKTADLSETMTHPSSSSNSS 926          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.160e-28
Identity = 69/145 (47.59%), Postives = 96/145 (66.21%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPK-RELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSM 433
            RDIK+SNILL  +F  KVADFG ARL +  ES   HVST + GT GY+ PEY ++ + T K DVYSFGV+L+ELVTG+ P  P  +E +    V WA++K + G A+ ++DP + + A  N  L ++L++A+ CLA     RP+M
Sbjct: 1042 RDIKASNILLDGDFEPKVADFGLARLISACES---HVSTVIAGTFGYIPPEYGQSARATTKGDVYSFGVILLELVTGKEPTGPDFKESEGGNLVGWAIQKINQGKAVDVIDPLLVSVALKNSQL-RLLQIAMLCLAETPAKRPNM 1182          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.685e-28
Identity = 68/144 (47.22%), Postives = 96/144 (66.67%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSM 433
            RD+K++NILL E+F+AK+ADFG +R  +    G THVST V GT GYLDPEY +T +L EKSDVYSFG++L+E++T R  I+  RE K  I   W     + GD  +++DPR+ N      ++ K LE+A+ C+ P  + RP+M
Sbjct:  697 RDVKTTNILLDEHFQAKLADFGLSR--SFPVGGETHVSTAVAGTPGYLDPEYYRTNRLNEKSDVYSFGIVLLEIITSRPVIQQTRE-KPHIAA-WVGYMLTKGDIENVVDPRL-NRDYEPTSVWKALEIAMSCVNPSSEKRPTM 835          
The following BLAST results are available for this feature:
BLAST of CX288960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
Y1677_ARATH1.036e-3043.65Probable LRR receptor-like serine/threonine-protei... [more]
Y5977_ARATH1.353e-3046.84Probable leucine-rich repeat receptor-like protein... [more]
NORK_MEDTR1.767e-3050.00Nodulation receptor kinase OS=Medicago truncatula ... [more]
NORK_PEA2.308e-3050.00Nodulation receptor kinase OS=Pisum sativum GN=NOR... [more]
Y2393_ARATH4.352e-2945.45Probable receptor-like protein kinase At2g39360 OS... [more]
WAKLQ_ARATH4.352e-2945.45Wall-associated receptor kinase-like 20 OS=Arabido... [more]
Y2296_ARATH9.696e-2943.79Probable receptor-like protein kinase At2g42960 OS... [more]
Y1684_ARATH9.696e-2943.55Probable LRR receptor-like serine/threonine-protei... [more]
EXS_ARATH2.160e-2847.59Leucine-rich repeat receptor protein kinase EXS OS... [more]
Y2289_ARATH3.685e-2847.22Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC02007D07SK IF1 Citrus clementina cDNA clone C02007D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288960 ID=CX288960; Name=CX288960; organism=Citrus clementina; type=EST; length=558bp
TAGAGACATAAAGTCCTCCAACATTCTCCTCACTGAAAACTTTCGAGCCA
AGGTAGCGGACTTTGGTTTTGCTAGATTAGCAGCTGATACTGAGTCAGGT
GCCACCCATGTATCAACCCAAGTTAAAGGAACTGCTGGCTACTTGGATCC
GGAATACCTGAAAACCTATCAACTTACTGAGAAGAGCGATGTTTATTCAT
TTGGTGTGTTACTGGTTGAACTCGTCACTGGAAGGCGCCCAATTGAACCA
AAAAGGGAACTCAAAGAGCGAATAACTGTAAAATGGGCAATGAAGAAATT
TTCTGATGGAGATGCCATTTCAATCTTGGACCCAAGGGTAGAAAACACTG
CAGCTAATAACTTGGCTCTTGAAAAGATACTTGAACTAGCCTTGCAATGC
TTGGCTCCACGCAGACAAAATCGGCCAAGCATGAGAAGATGTGCAGAGAT
CCTGTGGAGTGTACGTAAGGATTACAGAGAGCTAGCAGCTTCAGATGTCC
TTTTACAACCCTCTTATTCCAAAAGGAGCAATTCGACAAGAGAACAATAA
CAGCTTCA
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