CX288961

Overview
NameCX288961
Unique NameCX288961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288961_ssr73 microsatellite CX288961_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig165 contig Ccv1_Contig165:1..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: UMPK_ARATH (Uridylate kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.526e-63
Identity = 116/129 (89.92%), Postives = 125/129 (96.90%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET 611
            LGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA++E+GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC EEEME+R+L RNQGREDDN+ET
Sbjct:   20 LGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCPEEEMEKRLLGRNQGREDDNIET 148          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_PRUAR (Adenylate kinase OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.315e-47
Identity = 90/129 (69.77%), Postives = 107/129 (82.95%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET 611
            LGGPGSGKGTQCA IVE FG+TH+SAGDLLR EI SGS  G++I + I+EGKIVPS+VT++L+QK ME S N KFLIDGFPR+EENR AFE     EP+ VLFFDC E+EM +R+LNRNQGR DDN++T
Sbjct:   53 LGGPGSGKGTQCAKIVEAFGFTHVSAGDLLRREIASGSAYGSVILSTIREGKIVPSQVTVELIQKEMESSDNYKFLIDGFPRSEENRKAFEQTIGAEPDVVLFFDCPEQEMVKRVLNRNQGRVDDNIDT 181          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KCY_DICDI (Cytidylate kinase OS=Dictyostelium discoideum GN=pyrK PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.649e-38
Identity = 80/133 (60.15%), Postives = 101/133 (75.94%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVET 611
            LGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+IVPS VT+KLL+ A++ +    FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M +R+L R +  GR DDN+E+
Sbjct:   13 LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIES 145          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KCY_CHICK (UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.558e-33
Identity = 79/139 (56.83%), Postives = 96/139 (69.06%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVET 611
            LGGPG+GKGTQCA IVE +GYTHLSAGDLLR E K  GS+ G +I+N IKEG+IVP E+TI LL++AM++     S  +KFLIDGFPRNE+N   +      K +  FVLFFDC  E    R L R  + GR DDN E+
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGEIVPVEITISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFDCDNEICIGRCLERGKSSGRSDDNRES 147          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KCY_XENLA (UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.012e-32
Identity = 76/139 (54.68%), Postives = 94/139 (67.63%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-----ESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVET 611
            LGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++GKIVP E+TI LLQ+AME     ++   KFLIDGFPRNE+N   +E     K +  FVLFFDC  E    R L R  + GR DDN E+
Sbjct:    9 LGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGKIVPVEITISLLQRAMERTMAFDANKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFDCDNETCIERCLERGKSSGRSDDNRES 147          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KCY_XENTR (UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.138e-32
Identity = 77/139 (55.40%), Postives = 96/139 (69.06%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES----GN-DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVET 611
            LGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++G+IVP E+TI LLQ+AME++    GN  KFLIDGFPRNE+N   +E     K +  FVLFFDC  E    R L R  + GR DDN E+
Sbjct:    9 LGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGRIVPVEITISLLQRAMEQTMALDGNKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFDCDNETCIERCLERGKSSGRSDDNRES 147          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KCY_DANRE (UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 8.764e-32
Identity = 78/139 (56.12%), Postives = 97/139 (69.78%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAF--EAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVET 611
            LGGPG+GKGTQCA IVE++ YTHLSAGDLLR E  ++ SE G +I + IKEGKIVP ++TI LL+KAMEE+        +FLIDGFPRN++N   +  E   K + +FVLFFDCS E    R L R  + GR DDN E+
Sbjct:    9 LGGPGAGKGTQCARIVENYSYTHLSAGDLLREERSRTDSEFGQLIDSYIKEGKIVPVQITINLLRKAMEETMKADEKKFRFLIDGFPRNQDNLQGWNTEMDGKADVKFVLFFDCSNEVCIDRCLERGKSSGRTDDNRES 147          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KCY_MOUSE (UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 74/139 (53.24%), Postives = 95/139 (68.35%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVET 611
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+TI LL++ M++     +  +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R  + GR DDN E+
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRES 147          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KCY_HUMAN (UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 74/139 (53.24%), Postives = 95/139 (68.35%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVET 611
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+TI LL++ M++     +  +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R  + GR DDN E+
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRES 147          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: UMPK_YEAST (Uridylate kinase OS=Saccharomyces cerevisiae GN=URA6 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.419e-31
Identity = 69/135 (51.11%), Postives = 96/135 (71.11%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVET 611
            LGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG+IVP E+T+ LL+ A+ +   +   KFLIDGFPR  +   +FE    +E +F+LFFDC E+ M  R+L R +  GR DDN+E+
Sbjct:   22 LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIES 155          
The following BLAST results are available for this feature:
BLAST of CX288961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UMPK_ARATH2.526e-6389.92Uridylate kinase OS=Arabidopsis thaliana GN=PYR6 P... [more]
KAD_PRUAR3.315e-4769.77Adenylate kinase OS=Prunus armeniaca PE=2 SV=1[more]
KCY_DICDI1.649e-3860.15Cytidylate kinase OS=Dictyostelium discoideum GN=p... [more]
KCY_CHICK3.558e-3356.83UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1[more]
KCY_XENLA3.012e-3254.68UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=... [more]
KCY_XENTR5.138e-3255.40UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2... [more]
KCY_DANRE8.764e-3256.12UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2[more]
KCY_MOUSE5.681e-3153.24UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1[more]
KCY_HUMAN5.681e-3153.24UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3[more]
UMPK_YEAST7.419e-3151.11Uridylate kinase OS=Saccharomyces cerevisiae GN=UR... [more]

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Properties
Property NameValue
Genbank descriptionC02007D08SK IF1 Citrus clementina cDNA clone C02007D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288961 ID=CX288961; Name=CX288961; organism=Citrus clementina; type=EST; length=613bp
CCCCGGGCTGCAGGAAAAAACTAACATTGGCAATTGGCATCCCTCTGCCT
TCTTTCTTTCCCTCCATATTCTTCTCTCTCTCTCCAAACAAAACAACGCT
CGCAATTCGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCTGATGG
GAACTGTGGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAACTGTG
AAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGTGGAAAAGG
AACCCAGTGCGCAAACATTGTTGAACACTTTGGATACACCCATCTCAGTG
CTGGTGATCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATGGAACC
ATGATTCAGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAGGTCAC
AATTAAGCTTCTCCAAAAAGCAATGGAGGAAAGTGGAAATGATAAATTTC
TCATCGATGGTTTTCCCAGAAACGAGGAAAATCGTGCTGCATTTGAAGCT
GTTACCAAAATTGAGCCAGAATTCGTTCTGTTTTTTGACTGTTCTGAGGA
GGAGATGGAGAGGCGCATTTTGAATAGGAATCAGGGAAGAGAAGATGATA
ACGTTGAGACAAT
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