CX288964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 5.853e-32 Identity = 71/91 (78.02%), Postives = 71/91 (78.02%), Query Frame = 2 Query: 38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310 VAARVLENLGADPSNIRTQVIRM KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNNPCLI Sbjct: 209 VAARVLENLGADPSNIRTQVIRMVGESNEAVGASVGGGTSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLI 299
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.304e-31 Identity = 70/91 (76.92%), Postives = 71/91 (78.02%), Query Frame = 2 Query: 38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310 VAARVLENLGADP+NIRTQVIRM NK PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNNPCLI Sbjct: 209 VAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSNNKTPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLI 299
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 2.905e-31 Identity = 72/91 (79.12%), Postives = 72/91 (79.12%), Query Frame = 2 Query: 38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310 VAARVLENLGADPSNIRTQVIRM NKMPTLEEYGTNLTKLAEEGKLDPVVGR PQIERVVQILGRRTKNNPCLI Sbjct: 159 VAARVLENLGADPSNIRTQVIRMVGENNEVTANVGGGSGT-NKMPTLEEYGTNLTKLAEEGKLDPVVGRHPQIERVVQILGRRTKNNPCLI 248
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 2.459e-30 Identity = 69/91 (75.82%), Postives = 70/91 (76.92%), Query Frame = 2 Query: 38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310 VAARVLENLGADP+NIRTQVIRM KMPTLEEYGTNLTKLAEEGKLDPVVGRQ QIERV QILGRRTKNNPCLI Sbjct: 211 VAARVLENLGADPTNIRTQVIRMVGESSEAVGASVGGGTSGLKMPTLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTKNNPCLI 301
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 7.171e-22 Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 2 Query: 38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310 VAARVLENL D S+IR +VI+M +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNNP LI Sbjct: 119 VAARVLENLAVDVSSIRAEVIQMLGENAEANVSGSNTTQARSKTPTLEEFGSNLTQMAMEGGLDPVVGRQKEIERVIQILGRRTKNNPVLI 209
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 9.366e-22 Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 2 Query: 38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310 VAARVLENL D S+IR +VI+M +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNNP LI Sbjct: 119 VAARVLENLAVDVSSIRAEVIQMLGENAEANVSGSNATQARSKTPTLEEFGSNLTQMAIEGGLDPVVGRQKEIERVIQILGRRTKNNPVLI 209
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.086e-21 Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 2 Query: 38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310 VAARVLENLG D +R+ +IRM +K+PTLEE+GTNLT++A EGKLDPVVGR +IERVVQILGRRTKNNP LI Sbjct: 150 VAARVLENLGVDLPKLRSNIIRMIGETSEVSVGATSGR---SKVPTLEEFGTNLTQMAVEGKLDPVVGRAKEIERVVQILGRRTKNNPVLI 237
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 4.648e-21 Identity = 54/91 (59.34%), Postives = 63/91 (69.23%), Query Frame = 2 Query: 38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310 VAARVLENL D + +RTQVIR+ K PTLEE+G+NLT+ A EGKLDPV+GRQ +IERV+QILGRRTKNNP LI Sbjct: 119 VAARVLENLALDLTKVRTQVIRLLGDTAEVSATNGQTK---GKTPTLEEFGSNLTQKAAEGKLDPVIGRQKEIERVIQILGRRTKNNPILI 206
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: HSP78_YEAST (Heat shock protein 78, mitochondrial OS=Saccharomyces cerevisiae GN=HSP78 PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 2.470e-14 Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 2 Query: 170 PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310 P LE++GTNLTKLA +GKLDPV+GR +I R +QIL RRTKNNPCLI Sbjct: 96 PALEQFGTNLTKLARDGKLDPVIGRDEEIARAIQILSRRTKNNPCLI 142
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.214e-14 Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 2 Query: 38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXN-KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310 VAARVL NLG + R QV+++ N PTL+ +LT A+EGK+DPV+GR +IERV+Q+L RRTKNNP LI Sbjct: 119 VAARVLNNLGVSLNKARQQVLQLLGSNESQAGRQGRSGQQSNASTPTLDSLARDLTVSAKEGKIDPVIGRSKEIERVIQVLSRRTKNNPVLI 210 The following BLAST results are available for this feature:
BLAST of CX288964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288964 ID=CX288964; Name=CX288964; organism=Citrus clementina; type=EST; length=312bpback to top |