CX288964

Overview
NameCX288964
Unique NameCX288964
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length312
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.853e-32
Identity = 71/91 (78.02%), Postives = 71/91 (78.02%), Query Frame = 2
Query:   38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310
            VAARVLENLGADPSNIRTQVIRM                   KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNNPCLI
Sbjct:  209 VAARVLENLGADPSNIRTQVIRMVGESNEAVGASVGGGTSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLI 299          
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.304e-31
Identity = 70/91 (76.92%), Postives = 71/91 (78.02%), Query Frame = 2
Query:   38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310
            VAARVLENLGADP+NIRTQVIRM                  NK PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNNPCLI
Sbjct:  209 VAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSNNKTPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLI 299          
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.905e-31
Identity = 72/91 (79.12%), Postives = 72/91 (79.12%), Query Frame = 2
Query:   38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310
            VAARVLENLGADPSNIRTQVIRM                  NKMPTLEEYGTNLTKLAEEGKLDPVVGR PQIERVVQILGRRTKNNPCLI
Sbjct:  159 VAARVLENLGADPSNIRTQVIRMVGENNEVTANVGGGSGT-NKMPTLEEYGTNLTKLAEEGKLDPVVGRHPQIERVVQILGRRTKNNPCLI 248          
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.459e-30
Identity = 69/91 (75.82%), Postives = 70/91 (76.92%), Query Frame = 2
Query:   38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310
            VAARVLENLGADP+NIRTQVIRM                   KMPTLEEYGTNLTKLAEEGKLDPVVGRQ QIERV QILGRRTKNNPCLI
Sbjct:  211 VAARVLENLGADPTNIRTQVIRMVGESSEAVGASVGGGTSGLKMPTLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTKNNPCLI 301          
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.171e-22
Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310
            VAARVLENL  D S+IR +VI+M                  +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNNP LI
Sbjct:  119 VAARVLENLAVDVSSIRAEVIQMLGENAEANVSGSNTTQARSKTPTLEEFGSNLTQMAMEGGLDPVVGRQKEIERVIQILGRRTKNNPVLI 209          
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.366e-22
Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310
            VAARVLENL  D S+IR +VI+M                  +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNNP LI
Sbjct:  119 VAARVLENLAVDVSSIRAEVIQMLGENAEANVSGSNATQARSKTPTLEEFGSNLTQMAIEGGLDPVVGRQKEIERVIQILGRRTKNNPVLI 209          
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.086e-21
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310
            VAARVLENLG D   +R+ +IRM                  +K+PTLEE+GTNLT++A EGKLDPVVGR  +IERVVQILGRRTKNNP LI
Sbjct:  150 VAARVLENLGVDLPKLRSNIIRMIGETSEVSVGATSGR---SKVPTLEEFGTNLTQMAVEGKLDPVVGRAKEIERVVQILGRRTKNNPVLI 237          
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.648e-21
Identity = 54/91 (59.34%), Postives = 63/91 (69.23%), Query Frame = 2
Query:   38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310
            VAARVLENL  D + +RTQVIR+                   K PTLEE+G+NLT+ A EGKLDPV+GRQ +IERV+QILGRRTKNNP LI
Sbjct:  119 VAARVLENLALDLTKVRTQVIRLLGDTAEVSATNGQTK---GKTPTLEEFGSNLTQKAAEGKLDPVIGRQKEIERVIQILGRRTKNNPILI 206          
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: HSP78_YEAST (Heat shock protein 78, mitochondrial OS=Saccharomyces cerevisiae GN=HSP78 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.470e-14
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 2
Query:  170 PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310
            P LE++GTNLTKLA +GKLDPV+GR  +I R +QIL RRTKNNPCLI
Sbjct:   96 PALEQFGTNLTKLARDGKLDPVIGRDEEIARAIQILSRRTKNNPCLI 142          
BLAST of CX288964 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.214e-14
Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 2
Query:   38 VAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXN-KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 310
            VAARVL NLG   +  R QV+++                  N   PTL+    +LT  A+EGK+DPV+GR  +IERV+Q+L RRTKNNP LI
Sbjct:  119 VAARVLNNLGVSLNKARQQVLQLLGSNESQAGRQGRSGQQSNASTPTLDSLARDLTVSAKEGKIDPVIGRSKEIERVIQVLSRRTKNNPVLI 210          
The following BLAST results are available for this feature:
BLAST of CX288964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CLPAB_SOLLC5.853e-3278.02ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PEA1.304e-3176.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA2.905e-3179.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC2.459e-3075.82ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE7.171e-2259.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU9.366e-2259.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA2.086e-2160.44ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH4.648e-2159.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
HSP78_YEAST2.470e-1472.34Heat shock protein 78, mitochondrial OS=Saccharomy... [more]
CLPB_OCEIH4.214e-1445.65Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]

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Properties
Property NameValue
Genbank descriptionC02007D11SK IF1 Citrus clementina cDNA clone C02007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288964 ID=CX288964; Name=CX288964; organism=Citrus clementina; type=EST; length=312bp
GCATCTTCTCCTTGGGCTTCTTCGTGAAGGGGAAGGTGTAGCAGCTCGTG
TTCTTGAGAATTTAGGTGCTGACCCTAGTAACATCCGCACACAGGTTATT
CGTATGGTTGGTGAGAGCACAGAAGCTGTTGGCGCTGGTGTTGGAGGAGG
AAGCAGTGGCAACAAGATGCCAACACTGGAGGAGTATGGAACAAATTTGA
CTAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTTGGGAGACAGCCA
CAAATAGAGCGTGTTGTCCAAATTTTGGGCCGTCGAACTAAGAATAATCC
ATGTCTTATTGG
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