CX288965

Overview
NameCX288965
Unique NameCX288965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length178
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:338..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288965 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.082e-13
Identity = 38/54 (70.37%), Postives = 39/54 (72.22%), Query Frame = 2
Query:   17 GAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 178
            GA+YVVESTGVFT               VIISAPSKDAPMFVVGVNEHEYKPEL
Sbjct:   93 GADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPEL 146          
BLAST of CX288965 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 39/59 (66.10%), Postives = 40/59 (67.80%), Query Frame = 2
Query:    2 PGLQAGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 178
            P  Q GA+YVVESTGVFT               VIISAPSKDAPMFVVGVNEHEYK EL
Sbjct:   88 PWGQTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKSEL 146          
BLAST of CX288965 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 37/59 (62.71%), Postives = 41/59 (69.49%), Query Frame = 2
Query:    2 PGLQAGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 178
            P  +AGA+YVVESTGVFT               V+ISAPSKDAPMFVVGVNEHEYK +L
Sbjct:   90 PWAEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDL 148          
BLAST of CX288965 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.911e-13
Identity = 36/59 (61.02%), Postives = 40/59 (67.80%), Query Frame = 2
Query:    2 PGLQAGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 178
            P  + G EYVVESTGVFT               V+I+APSKDAPMFVVGVNEHEYKP+L
Sbjct:   91 PWGETGVEYVVESTGVFTDKEKAAAHIKGGAKKVVITAPSKDAPMFVVGVNEHEYKPDL 149          
BLAST of CX288965 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 37/59 (62.71%), Postives = 40/59 (67.80%), Query Frame = 2
Query:    2 PGLQAGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 178
            P  + GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNEHEYK +L
Sbjct:   91 PWGEVGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDL 149          
BLAST of CX288965 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 37/59 (62.71%), Postives = 41/59 (69.49%), Query Frame = 2
Query:    2 PGLQAGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 178
            P  QAGA++VVESTGVFT               V+ISAPSKDAPMFVVGVNEHEYK +L
Sbjct:   88 PWGQAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDL 146          
BLAST of CX288965 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.762e-12
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 2
Query:    2 PGLQAGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 175
            P  +AGA++VVESTGVFT               V+ISAPSKDAPMFVVGVNE EYKPE
Sbjct:   77 PWAEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPE 134          
BLAST of CX288965 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.302e-12
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 2
Query:    2 PGLQAGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 178
            P  +AGA++VVESTGVFT               V+ISAPSKDAPMFVVGVNEHEYK +L
Sbjct:   90 PWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDL 148          
BLAST of CX288965 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.127e-12
Identity = 35/59 (59.32%), Postives = 40/59 (67.80%), Query Frame = 2
Query:    2 PGLQAGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 178
            P  + GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNEH+YK ++
Sbjct:   91 PWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVGVNEHQYKSDV 149          
BLAST of CX288965 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.697e-12
Identity = 37/59 (62.71%), Postives = 40/59 (67.80%), Query Frame = 2
Query:    2 PGLQAGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 178
            P  +AGA+YVVESTGVFT               VIISAPSKDAPMFVVGVNE EYK +L
Sbjct:   88 PWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKSDL 146          
The following BLAST results are available for this feature:
BLAST of CX288965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
G3PC_DIACA2.082e-1370.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU3.551e-1366.10Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_ARATH3.551e-1362.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI7.911e-1361.02Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA1.033e-1262.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR1.033e-1262.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC1.762e-1262.07Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL2.302e-1261.02Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY5.127e-1259.32Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY6.697e-1262.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC02007D12SK IF1 Citrus clementina cDNA clone C02007D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288965 ID=CX288965; Name=CX288965; organism=Citrus clementina; type=EST; length=178bp
CCCCGGGCTGCAGGCTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCT
TTACAGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAA
GTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGT
CAATGAGCACGAGTACAAACCAGAGCTC
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