CX288966

Overview
NameCX288966
Unique NameCX288966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig166 contig Ccv1_Contig166:1..587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 8.262e-37
Identity = 81/158 (51.27%), Postives = 102/158 (64.56%), Query Frame = 1
Query:  115 LVRQLCSTPTETVSQRIAAPTPFPTGNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKN-RYTYGALLNCYCKELMTERALALFEKMDE 585
            +V    S+P      R +   P     + +LYK+LS L  TGG+V   LN +IMEG TVRKD L  C ++LRKF R +HA E+ +WME RK+ FS +D A+ LDL  KTKG+ AAE YFN+L   AKN + TYGAL+NCYC EL  E+A A FE MDE
Sbjct:   43 VVEASVSSPAAENGVRTSVAAPTVASRQRELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKRKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDE 200          
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.669e-29
Identity = 72/161 (44.72%), Postives = 98/161 (60.87%), Query Frame = 1
Query:  109 SYLVRQLCST---PTETVSQRIAAPTPFPTGNEDKLYKRLSALGATGGS-VTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKNRYTYGALLNCYCKELMTERALALFEKM 579
            S L R+ C+T    T  +S   AA  P        +YK+LS+LG  GG  +   LN ++MEG  V+K  L    + LRKF + + ALE+ EWME ++I F+ +D A+ L+L AK+KG+ AAE YFNSL +  KN+ TYG+LLNCYC E    +A A FE M
Sbjct:    6 SRLARRFCATLATATAEISGEAAASVPTKAKKHRSIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERKEIAFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENM 166          
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.084e-20
Identity = 57/130 (43.85%), Postives = 76/130 (58.46%), Query Frame = 1
Query:  196 EDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDE 585
            E+ LY RL   G T   V   LN ++   K V K  +   ++ LR  G Y  AL++ E ME R ++ + +D A++LDL AK + I A E YF  L E +K   TYG+LLNCYCKEL+TE+A  L  KM E
Sbjct:   22 EEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEERGMNKTVSDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKE 151          
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.849e-20
Identity = 48/138 (34.78%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  175 TPFPTGNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIH-FSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDE 585
            TP P    D L +R++  G    S+   L+ ++ +G  V+   L   ++ LRKF R+ HAL++ +WM   ++H  S  D A+ LDL AK  G+  AE++F ++    +N + YGALLNCY  + +  +A  +F++M E
Sbjct:   30 TPSPLDPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKE 167          
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.154e-20
Identity = 58/128 (45.31%), Postives = 74/128 (57.81%), Query Frame = 1
Query:  205 LYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM-ESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDE 585
            LY ++S LG    SV   L  ++  GK V    L   V  LR+  R+ HALEV +WM E+    FS T+ AV+LDL  +  G   AEEYF +L E  KN  TYGALLNCY ++   E++L  FEKM E
Sbjct:   27 LYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKE 154          
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.913e-17
Identity = 51/133 (38.35%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  190 GNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRK-IHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDE 585
            G  D L  RL +L  T  S    +  +  EG +VRK  L   VR LRK  RY+HALE+ EWM  ++ I     D+AV+LDL +K +G+ +AE++F  + +  +      +LL+ Y +  ++++A ALFEKM E
Sbjct:   58 GGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGE 190          
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.055e-15
Identity = 51/131 (38.93%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  196 EDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM-ESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDE 585
            +D L  R+  L     S T  L  +I EG  +  + L    + LR+  RY+HALEV EWM +  +   S  D+A  +DL +K  GI AAE YF  L   +K   TY +LL+ Y     TERA ALF+++ E
Sbjct:   54 KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIE 184          
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.990e-15
Identity = 48/127 (37.80%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  205 LYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESR--KIHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKNRYTYGALLNCYCKELMTERALALFEKM 579
            +YK++S +          LN +   G+ + K  L   V+ LRK+ R   ALEV +WM +R  +   S +D A+ LDL  K +GI  AEE+F  L E  K+R  YG+LLN Y +    E+A AL   M
Sbjct:   69 IYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTM 195          
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 45/118 (38.14%), Postives = 60/118 (50.85%), Query Frame = 1
Query:  244 SVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRK-IHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKN----RYTYGALLNCYCKELMTERALALFEKMD 582
            SVT  L   I  G  V    L    + L +  RY  AL+++EWME++K I FS  D A+ LDL  KT G+   EEYF  L   + +    +  Y  LL  Y K  M + A AL EK++
Sbjct:   53 SVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLN 170          
The following BLAST results are available for this feature:
BLAST of CX288966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PPR4_ARATH8.262e-3751.27Pentatricopeptide repeat-containing protein At1g02... [more]
PP300_ARATH1.669e-2944.72Pentatricopeptide repeat-containing protein At4g01... [more]
PPR86_ARATH1.084e-2043.85Pentatricopeptide repeat-containing protein At1g60... [more]
PP166_ARATH1.849e-2034.78Pentatricopeptide repeat-containing protein At2g20... [more]
PP334_ARATH3.154e-2045.31Pentatricopeptide repeat-containing protein At4g21... [more]
PP302_ARATH1.913e-1738.35Pentatricopeptide repeat-containing protein At4g02... [more]
PP372_ARATH3.055e-1538.93Pentatricopeptide repeat-containing protein At5g09... [more]
PPR3_ARATH3.990e-1537.80Pentatricopeptide repeat-containing protein At1g02... [more]
PP400_ARATH7.787e-1138.14Pentatricopeptide repeat-containing protein At5g27... [more]
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Properties
Property NameValue
Genbank descriptionC02007E01SK IF1 Citrus clementina cDNA clone C02007E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288966 ID=CX288966; Name=CX288966; organism=Citrus clementina; type=EST; length=587bp
AAACTATAAAACCCCATAAAAAAGTCGAAGTTGCTATTACTGAACTGAAG
GATTGGGGGAAAACGGAAGATGATGATTCGCAATCAAAGCCGTCTGATAT
CAACCGGATCGTATCTCGTGAGGCAATTATGTAGCACGCCAACGGAAACA
GTTTCGCAAAGGATAGCGGCGCCGACGCCGTTTCCGACCGGAAATGAAGA
TAAACTGTACAAGAGGCTGTCGGCTCTCGGAGCCACCGGAGGCAGCGTGA
CCGGGGCGCTAAATGCGTACATAATGGAGGGTAAAACCGTCAGAAAAGAT
ATGCTCGAATATTGCGTCCGGAGCCTCCGCAAATTTGGCCGCTACCGTCA
TGCACTTGAGGTCATTGAATGGATGGAGAGTCGGAAAATACATTTCTCTT
ACACTGACTTTGCAGTATATCTAGATCTTACGGCAAAAACCAAAGGGATA
GCTGCTGCTGAAGAGTACTTCAATAGCCTCTCAGAATATGCAAAGAATAG
ATACACTTATGGAGCACTTCTGAATTGCTATTGCAAGGAACTTATGACGG
AAAGGGCATTGGCTCTGTTTGAGAAGATGGATGAACT
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