CX288966
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 8.262e-37 Identity = 81/158 (51.27%), Postives = 102/158 (64.56%), Query Frame = 1 Query: 115 LVRQLCSTPTETVSQRIAAPTPFPTGNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKN-RYTYGALLNCYCKELMTERALALFEKMDE 585 +V S+P R + P + +LYK+LS L TGG+V LN +IMEG TVRKD L C ++LRKF R +HA E+ +WME RK+ FS +D A+ LDL KTKG+ AAE YFN+L AKN + TYGAL+NCYC EL E+A A FE MDE Sbjct: 43 VVEASVSSPAAENGVRTSVAAPTVASRQRELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKRKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDE 200
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.669e-29 Identity = 72/161 (44.72%), Postives = 98/161 (60.87%), Query Frame = 1 Query: 109 SYLVRQLCST---PTETVSQRIAAPTPFPTGNEDKLYKRLSALGATGGS-VTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKNRYTYGALLNCYCKELMTERALALFEKM 579 S L R+ C+T T +S AA P +YK+LS+LG GG + LN ++MEG V+K L + LRKF + + ALE+ EWME ++I F+ +D A+ L+L AK+KG+ AAE YFNSL + KN+ TYG+LLNCYC E +A A FE M Sbjct: 6 SRLARRFCATLATATAEISGEAAASVPTKAKKHRSIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERKEIAFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENM 166
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.084e-20 Identity = 57/130 (43.85%), Postives = 76/130 (58.46%), Query Frame = 1 Query: 196 EDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDE 585 E+ LY RL G T V LN ++ K V K + ++ LR G Y AL++ E ME R ++ + +D A++LDL AK + I A E YF L E +K TYG+LLNCYCKEL+TE+A L KM E Sbjct: 22 EEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEERGMNKTVSDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKE 151
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.849e-20 Identity = 48/138 (34.78%), Postives = 79/138 (57.25%), Query Frame = 1 Query: 175 TPFPTGNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIH-FSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDE 585 TP P D L +R++ G S+ L+ ++ +G V+ L ++ LRKF R+ HAL++ +WM ++H S D A+ LDL AK G+ AE++F ++ +N + YGALLNCY + + +A +F++M E Sbjct: 30 TPSPLDPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKE 167
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.154e-20 Identity = 58/128 (45.31%), Postives = 74/128 (57.81%), Query Frame = 1 Query: 205 LYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM-ESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDE 585 LY ++S LG SV L ++ GK V L V LR+ R+ HALEV +WM E+ FS T+ AV+LDL + G AEEYF +L E KN TYGALLNCY ++ E++L FEKM E Sbjct: 27 LYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKE 154
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.913e-17 Identity = 51/133 (38.35%), Postives = 77/133 (57.89%), Query Frame = 1 Query: 190 GNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRK-IHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDE 585 G D L RL +L T S + + EG +VRK L VR LRK RY+HALE+ EWM ++ I D+AV+LDL +K +G+ +AE++F + + + +LL+ Y + ++++A ALFEKM E Sbjct: 58 GGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGE 190
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.055e-15 Identity = 51/131 (38.93%), Postives = 70/131 (53.44%), Query Frame = 1 Query: 196 EDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM-ESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDE 585 +D L R+ L S T L +I EG + + L + LR+ RY+HALEV EWM + + S D+A +DL +K GI AAE YF L +K TY +LL+ Y TERA ALF+++ E Sbjct: 54 KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIE 184
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 3.990e-15 Identity = 48/127 (37.80%), Postives = 68/127 (53.54%), Query Frame = 1 Query: 205 LYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESR--KIHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKNRYTYGALLNCYCKELMTERALALFEKM 579 +YK++S + LN + G+ + K L V+ LRK+ R ALEV +WM +R + S +D A+ LDL K +GI AEE+F L E K+R YG+LLN Y + E+A AL M Sbjct: 69 IYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTM 195
BLAST of CX288966 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11 Identity = 45/118 (38.14%), Postives = 60/118 (50.85%), Query Frame = 1 Query: 244 SVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRK-IHFSYTDFAVYLDLTAKTKGIAAAEEYFNSLSEYAKN----RYTYGALLNCYCKELMTERALALFEKMD 582 SVT L I G V L + L + RY AL+++EWME++K I FS D A+ LDL KT G+ EEYF L + + + Y LL Y K M + A AL EK++ Sbjct: 53 SVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLN 170 The following BLAST results are available for this feature:
BLAST of CX288966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288966 ID=CX288966; Name=CX288966; organism=Citrus clementina; type=EST; length=587bpback to top |