CX288967

Overview
NameCX288967
Unique NameCX288967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288967 vs. ExPASy Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.649e-45
Identity = 88/134 (65.67%), Postives = 100/134 (74.63%), Query Frame = 3
Query:  255 MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGVWQKRAGSRSGSSWV 656
            MV S+KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFET            +LMNGQNAKTNFP++K           +S  +  K  SELLN+KLRK CKDL+PSLTCLRLD D+SHIGVWQKRAGS++  +WV
Sbjct:    1 MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPVVKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGVWQKRAGSKTSPTWV 134          
BLAST of CX288967 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.714e-44
Identity = 88/134 (65.67%), Postives = 101/134 (75.37%), Query Frame = 3
Query:  255 MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGVWQKRAGSRSGSSWV 656
            MV SKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+T            VLMNGQ+AKTNFP++K N   +   + +S     K  SELLN+KLRK CKD +P LTCLRLDND+SHIGVWQKRAGS++  +WV
Sbjct:    1 MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPVIKSNG--SNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAGSKTSPNWV 132          
BLAST of CX288967 vs. ExPASy Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41
Identity = 86/141 (60.99%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  255 MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFPILKPNNPE-AEG------TKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGVWQKRAGSRSGSSWV 656
            MVQ+KKFRGVRQR WGSWV+EIRHPLLKRR+WLGTFET            VLM+G+NAKTNFP+   N  E +EG      +   S +      S +L++KLRKCCK  SPSLTCLRLD  +SHIGVWQKRAGS+S SSWV
Sbjct:    1 MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDTASSHIGVWQKRAGSKSDSSWV 141          
BLAST of CX288967 vs. ExPASy Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.996e-17
Identity = 49/94 (52.13%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  267 KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKC 548
            ++FRGVRQR WGSWVSEIRHPLLK R+WLGTFET             LM G  A+TNFP     NP A  T  S      K  S  L +KL KC
Sbjct:    6 QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY----NPNAIPTSSS------KLLSATLTAKLHKC 89          
BLAST of CX288967 vs. ExPASy Swiss-Prot
Match: PZ02_LUPPO (Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 41/94 (43.62%), Postives = 51/94 (54.26%), Query Frame = 3
Query:  267 KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKC 548
            +++RG RQR WGSWVSEIRH +LK R+W GTFE+             LM G  A+TNFP     NP A  +  S      K  S  L +KL +C
Sbjct:    6 QRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRARTNFPY----NPNASQSSSS------KLLSATLIAKLHRC 89          
BLAST of CX288967 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 40/120 (33.33%), Postives = 60/120 (50.00%), Query Frame = 3
Query:  237 LSNSTNMVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDND 596
            +S  +++ + KKFRGVRQR WG W +EIR P   +RVWLGT++T            V + G +A TNFP+          T+  + ++ + G          K   D++ S T +  DND
Sbjct:   86 VSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAEVTVTVTETETESVADGG---------DKSENDVALSPTSVLCDND 196          
BLAST of CX288967 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 34/71 (47.89%), Postives = 40/71 (56.34%), Query Frame = 3
Query:  261 QSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFPILKPNNPEAE 473
            Q KKFRGVRQR WG W +EIR P  +RR+WLGTFET            + + G +A TNF I      E E
Sbjct:  121 QIKKFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSIPPQEEEEEE 191          
BLAST of CX288967 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 3
Query:  216 SAITIAQLSNSTNMVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFP 443
            SA+T  +  +S ++ + KK+RGVRQR WG W +EIR P    RVWLGTFET            +   G  AK NFP
Sbjct:   43 SAVT-KECESSMSLERPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117          
BLAST of CX288967 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.492e-11
Identity = 36/100 (36.00%), Postives = 50/100 (50.00%), Query Frame = 3
Query:  264 SKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLS 563
            +K +RGVRQR WG WV+EIR P  + R+WLGTF+T              + G  A+ NFP L+ N     G  G       K     +++KL   CK ++
Sbjct:  149 TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGDFGE-----YKPLHSSVDAKLEAICKSMA 243          
BLAST of CX288967 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 3
Query:  252 NMVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDL 560
            NM   K +RGVRQR WG WV+EIR P  + R+WLGTF+T              + G+ A+ NFP  +  +    G  GS +N         +++KL++ C+ L
Sbjct:   86 NMTAQKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQFRHEDGYYGG--GSCFN----PLHSSVDAKLQEICQSL 182          
The following BLAST results are available for this feature:
BLAST of CX288967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SHN2_ARATH4.649e-4565.67Ethylene-responsive transcription factor SHINE 2 O... [more]
SHN3_ARATH6.714e-4465.67Ethylene-responsive transcription factor SHINE 3 O... [more]
WIN1_ARATH1.828e-4160.99Ethylene-responsive transcription factor WIN1 OS=A... [more]
ERF03_ARATH6.996e-1752.13Ethylene-responsive transcription factor ERF003 OS... [more]
PZ02_LUPPO8.005e-1343.62Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE... [more]
PTI6_SOLLC8.850e-1233.33Pathogenesis-related genes transcriptional activat... [more]
CRF3_ARATH8.850e-1247.89Ethylene-responsive transcription factor CRF3 OS=A... [more]
RAP26_ARATH5.737e-1144.74Ethylene-responsive transcription factor RAP2-6 OS... [more]
RAP24_ARATH7.492e-1136.00Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF60_ARATH9.785e-1135.92Ethylene-responsive transcription factor ERF060 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02007E03SK IF1 Citrus clementina cDNA clone C02007E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288967 ID=CX288967; Name=CX288967; organism=Citrus clementina; type=EST; length=657bp
TTCTTGTGGTTAAGAAGCTCAGCTATGGGGTTTCGTTTTATCATGAATGA
AATTATGAGGGTGTGCAGGTGAAATCTTAATTGCGGCAAAGACTATTTTA
CTAGTTGACTTTGGAGCCATTCACCGACAACATTTTGTACCACAATATAT
ACATGAGCATACATCATGCTTCACTTCTCATCGTCCCTAATCAGTCATAT
TTATGATCCCCTGCAAGTGCAATAACAATAGCCCAGTTATCTAATTCCAC
CAACATGGTACAATCAAAGAAGTTCAGAGGCGTCAGGCAACGCCAGTGGG
GCTCTTGGGTGTCCGAAATTCGCCACCCATTACTGAAGAGGAGGGTGTGG
CTTGGAACATTTGAGACGGCTGAGGCAGCGGCAAGAGCTTATGATCAAGC
AGCCGTCTTGATGAATGGCCAAAATGCCAAGACTAATTTTCCAATCCTGA
AGCCCAATAATCCTGAAGCTGAAGGCACCAAGGGTAGTAGTTACAATATT
CCTGAGAAGGGGTTTTCGGAACTCCTAAACTCGAAGCTTAGGAAGTGTTG
CAAAGATTTATCGCCTTCGCTCACTTGCTTGAGGCTCGACAACGATAATT
CTCATATCGGGGTCTGGCAGAAGCGAGCAGGATCTCGTTCAGGATCCAGT
TGGGTCA
back to top