CX288972

Overview
NameCX288972
Unique NameCX288972
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288972 vs. ExPASy Swiss-Prot
Match: GRDH_DAUCA (Glucose and ribitol dehydrogenase OS=Daucus carota GN=CAISE5 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.008e-82
Identity = 148/192 (77.08%), Postives = 172/192 (89.58%), Query Frame = 2
Query:   17 MASNNQ-PPQKQDTQPGKEHVMNPIPQFTSPDYTPSNKLRGMVALVTGGDSGIGRAVCHCFAQEGATVAFTYVKPQEDKDAKETLEMLRKAKTPDAKDPMAISADLGFDENCKRVVDEVVNAYGKIDILVNNAAEQYECGSVEDIDESRLERVFRTNIFSYFFMARHALKHMKAGSSIINTTSVNAYKGNAK 589
            MAS  Q PPQKQ++QPGKEH+M+P PQ  SP Y P+NKL+G VALVTGGDSGIGR+VC+ FA EGATVAFT+VK  EDKDA ETLE+LRKAK+ DAKDP+AI+ADLGFD+NCK+VVD+VVNA+G ID+LVNNAAEQY+  +VEDIDE RLERVFRTNIF+YFFMARHALKHM+ GS+IINTTS+NAYKGNAK
Sbjct:    1 MASGGQFPPQKQESQPGKEHLMDPSPQHASPHYKPANKLQGKVALVTGGDSGIGRSVCYHFALEGATVAFTFVKGHEDKDANETLELLRKAKSSDAKDPIAIAADLGFDDNCKKVVDQVVNAFGSIDVLVNNAAEQYKASTVEDIDEERLERVFRTNIFAYFFMARHALKHMREGSTIINTTSINAYKGNAK 192          
BLAST of CX288972 vs. ExPASy Swiss-Prot
Match: GRDH1_ARATH (Glucose and ribitol dehydrogenase homolog 1 OS=Arabidopsis thaliana GN=At1g54870 PE=1 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 2.745e-80
Identity = 143/182 (78.57%), Postives = 162/182 (89.01%), Query Frame = 2
Query:   41 QKQDTQPGKEHVMNPIPQFTSPDYTPSNKLRGMVALVTGGDSGIGRAVCHCFAQEGATVAFTYVKPQEDKDAKETLEMLRKAKTPDAKDPMAISADLGFDENCKRVVDEVVNAYGKIDILVNNAAEQYECGSVEDIDESRLERVFRTNIFSYFFMARHALKHMKAGSSIINTTSVNAYKGNA 586
            QKQ  QPGKEHVM   PQF+S DY PSNKLRG VAL+TGGDSGIGRAV +CFA EGATVAFTYVK QE+KDA+ETL+ML++ KT D+K+P+AI  DLGFDENCKRVVDEVVNA+G+ID+L+NNAAEQYE  ++E+IDE RLERVFRTNIFSYFF+ RHALKHMK GSSIINTTSVNAYKGNA
Sbjct:    6 QKQHAQPGKEHVMESSPQFSSSDYQPSNKLRGKVALITGGDSGIGRAVGYCFASEGATVAFTYVKGQEEKDAQETLQMLKEVKTSDSKEPIAIPTDLGFDENCKRVVDEVVNAFGRIDVLINNAAEQYESSTIEEIDEPRLERVFRTNIFSYFFLTRHALKHMKEGSSIINTTSVNAYKGNA 187          
BLAST of CX288972 vs. ExPASy Swiss-Prot
Match: GRDH2_ARATH (Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana GN=At3g05260 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.488e-73
Identity = 132/184 (71.74%), Postives = 161/184 (87.50%), Query Frame = 2
Query:   35 PPQKQDTQPGKEHVMNPIPQFTSPDYTPSNKLRGMVALVTGGDSGIGRAVCHCFAQEGATVAFTYVKPQEDKDAKETLEMLRKAKTPDAKDPMAISADLGFDENCKRVVDEVVNAYGKIDILVNNAAEQYECGSVEDIDESRLERVFRTNIFSYFFMARHALKHMKAGSSIINTTSVNAYKGNA 586
            PPQKQ+TQPG +HVM P P+F+S +Y PSNKL G VALVTGGDSGIG+AVCHC+A EGA+VAFTYVK +EDKDA+ETL +L + KT +AK+P+ I+ DLGF+ENCKRVV+EVVN++G+ID+LVN AAEQ+E  S+EDIDE+RLERVFRTNIFS FF+ ++ALKHMK GSSIINTTSV AY GN+
Sbjct:    6 PPQKQETQPGIQHVMEPTPEFSSSNYKPSNKLHGKVALVTGGDSGIGKAVCHCYALEGASVAFTYVKGREDKDAEETLRLLHEVKTREAKEPIMIATDLGFEENCKRVVEEVVNSFGRIDVLVNCAAEQHEV-SIEDIDEARLERVFRTNIFSQFFLVKYALKHMKEGSSIINTTSVVAYAGNS 188          
BLAST of CX288972 vs. ExPASy Swiss-Prot
Match: GRDH_ORYSJ (Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica GN=Os05g0140800 PE=2 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 4.545e-67
Identity = 134/200 (67.00%), Postives = 155/200 (77.50%), Query Frame = 2
Query:   17 MASNNQPPQKQDTQPGKEHVMNPIPQFTSPDYTPSNKLRGMVALVTGGDSGIGRAVCHCFAQEGATVAFTYVKPQEDKDAKETLEMLR--KAKTPDAKDPMAISADLGFDENCKRVVDEVVNAY-GKIDILVNNAAEQYECGSVEDIDESRLERVFRTNIFSYFFMARHALKHMK--------AGSSIINTTSVNAYKGN 583
            MAS   PPQ Q+TQPGKEH M+P P+     Y P+NKL+  VA+VTGGDSGIGRAVC CFA EGATVAFTYVK QE+KDA+ETL  LR  +A+T  AKDPMAI ADLG+D+NC++VVDEV  AY G IDILVNNAAEQYE  S+ DI E  LERVFRTNIFSYFFM++HA+K M+         G SIINT+S+NAYKGN
Sbjct:    1 MASQQFPPQNQETQPGKEHAMDPRPEAIIQSYKPANKLKDKVAIVTGGDSGIGRAVCLCFALEGATVAFTYVKGQEEKDAEETLRALRDIRART-GAKDPMAIPADLGYDDNCRKVVDEVAGAYGGAIDILVNNAAEQYERPSITDITEDDLERVFRTNIFSYFFMSKHAVKRMRDRRGGAGAGGCSIINTSSINAYKGN 199          
BLAST of CX288972 vs. ExPASy Swiss-Prot
Match: YHDF_BACSU (Uncharacterized oxidoreductase yhdF OS=Bacillus subtilis GN=yhdF PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.511e-41
Identity = 87/187 (46.52%), Postives = 121/187 (64.71%), Query Frame = 2
Query:   23 SNNQPPQKQDTQPGKEHVMNPIPQFTSPDYTPSNKLRGMVALVTGGDSGIGRAVCHCFAQEGATVAFTYVKPQEDKDAKETLEMLRKAKTPDAKDPMAISADLGFDENCKRVVDEVVNAYGKIDILVNNAAEQYECGSVEDIDESRLERVFRTNIFSYFFMARHALKHMKAGSSIINTTSVNAYKGN 583
            +  Q PQ QD QPG E  MNP+P     DY  S KL+G VA++TGGDSGIGRA    FA+EGA ++  Y+   E  DA+ET + + K         + I  D+G + +C++ V + V+ +GK+DILVNNAAEQ+   S+ +I   +LE+ FRTNIFS F M + AL H++ G +IINTTS+ AY+G+
Sbjct:    8 TEGQEPQHQDRQPGIESKMNPLPLSEDEDYRGSGKLKGKVAIITGGDSGIGRAAAIAFAKEGADISILYL--DEHSDAEETRKRIEKENVRC----LLIPGDVGDENHCEQAVQQTVDHFGKLDILVNNAAEQHPQDSILNISTEQLEKTFRTNIFSMFHMTKKALPHLQEGCAIINTTSITAYEGD 188          
BLAST of CX288972 vs. ExPASy Swiss-Prot
Match: GS39_BACSU (General stress protein 39 OS=Bacillus subtilis GN=ydaD PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.167e-38
Identity = 82/183 (44.81%), Postives = 113/183 (61.75%), Query Frame = 2
Query:   35 PPQKQDTQPGKEHVMNPIPQFTSPDYTPSNKLRGMVALVTGGDSGIGRAVCHCFAQEGATVAFTYVKPQEDKDAKETLEMLRKAKTPDAKDPMAISADLGFDENCKRVVDEVVNAYGKIDILVNNAAEQYECGSVEDIDESRLERVFRTNIFSYFFMARHALKHMKAGSSIINTTSVNAYKGN 583
            P Q Q  QPG E  MNP P +   DY  ++KL+G VAL+TGGDSGIGRAV   +A+EGA +A  Y      KD  E  E  +K    +    + I+ D+G +E C   V++ V   G +DILVNNA EQ+   S++DI   +L R F+TN +S F++ + A+ ++K GS+IINTTS+N Y GN
Sbjct:    9 PAQTQSRQPGIESEMNPSPVYEYEDYKGADKLKGKVALITGGDSGIGRAVSVAYAKEGADIAIVY------KDEHEDAEETKKRVEQEGVKCLLIAGDVGEEEFCNEAVEKTVKELGGLDILVNNAGEQHPKESIKDITSEQLHRTFKTNFYSQFYLTKKAIDYLKPGSAIINTTSINPYVGN 185          
BLAST of CX288972 vs. ExPASy Swiss-Prot
Match: YHXC_BACSU (Uncharacterized oxidoreductase yhxC OS=Bacillus subtilis GN=yhxC PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.433e-38
Identity = 87/192 (45.31%), Postives = 117/192 (60.94%), Query Frame = 2
Query:    8 VTNMASNNQPPQKQDTQPGKEHVMNPIPQFTSPDYTPSNKLRGMVALVTGGDSGIGRAVCHCFAQEGATVAFTYVKPQEDKDAKETLEMLRKAKTPDAKDPMAISADLGFDENCKRVVDEVVNAYGKIDILVNNAAEQYECGSVEDIDESRLERVFRTNIFSYFFMARHALKHMKAGSSIINTTSVNAYKGN 583
            + N      PPQ Q+ QPG E++M+P P F  P    + KL G  A++TGGDSGIGRAV   FA+EGA V   Y+   E +DA+ET + + K    +    + I+ D+G +  C  VV +    +  IDILVNNAAEQ+   S+E I   +L R F+TNIFS F++ +  L H+K GSSIINT S+ AYKGN
Sbjct:    1 MANQKKKTLPPQHQNQQPGFEYLMDPRPVFDKPK--KAKKLEGKTAIITGGDSGIGRAVSVLFAKEGANVVIVYLN--EHQDAEETKQYVEK----EGVKCLLIAGDVGDEAFCNDVVGQASQVFPSIDILVNNAAEQHVQPSIEKITSHQLIRTFQTNIFSMFYLTKAVLPHLKKGSSIINTASITAYKGN 184          
BLAST of CX288972 vs. ExPASy Swiss-Prot
Match: YAY8_SCHPO (Uncharacterized oxidoreductase C4H3.08 OS=Schizosaccharomyces pombe GN=SPAC4H3.08 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.598e-27
Identity = 68/186 (36.56%), Postives = 107/186 (57.53%), Query Frame = 2
Query:   35 PPQKQDTQPGKEHVMNPIPQFT----SPDYTPSNKLRGMVALVTGGDSGIGRAVCHCFAQEGATVAFTYVKPQEDKDAKETLEMLRKAKTPDAKDPMAISADLGFDENCKRVVDEVVNAYGKIDILVNNAAEQYECGSVEDIDESRLERVFRTNIFSYFFMARHALKHMKAGSSIINTTSVNAYKG 580
            P  +    PGK   ++P P          +  S KL     L+TGGDSGIG+A    FA+EG+ +  + + P+E  DA+ T +++ +    + ++       L   +NC+ +VD  +   G ID+LVNN A Q    S+EDID+ + +  F+TNIFS+F++ + A+ HMK+GSSI+N +S+NAY G
Sbjct:    5 PSTQTQKWPGKHADLDPEPSLLRYCDGRVHVGSGKLAEKKTLLTGGDSGIGKAAAVMFAREGSDLVISCL-PEERDDAEVTRDLIER----EGRNCWIWEGKLDKSDNCRDLVDFALKKLGWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAAISHMKSGSSIVNCSSINAYVG 185          
BLAST of CX288972 vs. ExPASy Swiss-Prot
Match: YHXD_BACSU (Uncharacterized oxidoreductase yhxD OS=Bacillus subtilis GN=yhxD PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.282e-26
Identity = 64/179 (35.75%), Postives = 100/179 (55.87%), Query Frame = 2
Query:   38 PQKQDTQPGKEHVMNPIPQFTSPDYTPSNKLRGMVALVTGGDSGIGRAVCHCFAQEGATVAFTYVKPQEDKDAKETLEMLRKAKTPDAKDPMAISADLGFDENCKRVVDEVVNAYGKIDILVNNAAEQYECGSVEDIDESRLERVFRTNIFSYFFMARHALKHMKAGSSIINTTSVNAY 574
            P++    PG +  M P+P      Y  S KL G  ALVTGGDSGIGRA    +A+EGA VA  Y+ P+E  DA+E  E++      + +  + I  DL  +  C+ +V +  +  G +D+L   A +Q    ++ED+   ++ + F  N+FS +++ + AL ++  G+SII TTSV  Y
Sbjct:   19 PEQYQEPPGLQKNMKPVPDCGEKSYKGSGKLTGRKALVTGGDSGIGRAAAIAYAREGADVAINYL-PEEQPDAEEVKELIE----AEGRKAVLIPGDLSDESFCQDLVKQSHHELGGLDVLALVAGKQQAVENIEDLPTEQIYKTFEVNVFSLYWVVKAALPYLPEGASIITTTSVEGY 192          
BLAST of CX288972 vs. ExPASy Swiss-Prot
Match: YGHA_ECOLI (Uncharacterized oxidoreductase yghA OS=Escherichia coli (strain K12) GN=yghA PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.789e-24
Identity = 62/189 (32.80%), Postives = 105/189 (55.56%), Query Frame = 2
Query:   11 TNMASNNQPPQKQDTQPGKEHVMNPIPQFTSPDYTPSNKLRGMVALVTGGDSGIGRAVCHCFAQEGATVAFTYVKPQEDKDAKETLEMLRKAKTPDAKDPMAISADLGFDENCKRVVDEVVNAYGKIDILVNNAAEQYECGSVEDIDESRLERVFRTNIFSYFFMARHALKHMKAGSSIINTTSVNAYK 577
            T   +   P QKQ T PG +  M P+P      Y  S +L+   ALVTGGDSGIGRA    +A+EGA VA +Y+ P E++DA++  +++ +      +  + +  DL  ++  + +V E   A G +DI+   A +Q     + D+   + ++ F  N+F+ F++ + A+  +  G+SII T+S+ AY+
Sbjct:    9 TQYYTGEYPKQKQPT-PGIQAKMTPVPDCGEKTYVGSGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYL-PVEEEDAQDVKKIIEEC----GRKAVLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQ 191          
The following BLAST results are available for this feature:
BLAST of CX288972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
GRDH_DAUCA1.008e-8277.08Glucose and ribitol dehydrogenase OS=Daucus carota... [more]
GRDH1_ARATH2.745e-8078.57Glucose and ribitol dehydrogenase homolog 1 OS=Ara... [more]
GRDH2_ARATH2.488e-7371.74Glucose and ribitol dehydrogenase homolog 2 OS=Ara... [more]
GRDH_ORYSJ4.545e-6767.00Glucose and ribitol dehydrogenase homolog OS=Oryza... [more]
YHDF_BACSU2.511e-4146.52Uncharacterized oxidoreductase yhdF OS=Bacillus su... [more]
GS39_BACSU1.167e-3844.81General stress protein 39 OS=Bacillus subtilis GN=... [more]
YHXC_BACSU4.433e-3845.31Uncharacterized oxidoreductase yhxC OS=Bacillus su... [more]
YAY8_SCHPO4.598e-2736.56Uncharacterized oxidoreductase C4H3.08 OS=Schizosa... [more]
YHXD_BACSU2.282e-2635.75Uncharacterized oxidoreductase yhxD OS=Bacillus su... [more]
YGHA_ECOLI2.789e-2432.80Uncharacterized oxidoreductase yghA OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionC02007E08SK IF1 Citrus clementina cDNA clone C02007E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288972 ID=CX288972; Name=CX288972; organism=Citrus clementina; type=EST; length=589bp
GTTGAGTGTGACGAACATGGCTTCTAATAACCAGCCTCCTCAGAAGCAGG
ACACTCAGCCTGGCAAAGAGCATGTTATGAATCCCATTCCTCAATTCACC
AGCCCTGATTACACCCCTTCTAATAAACTTCGTGGGATGGTAGCCCTGGT
GACCGGAGGCGACTCCGGGATCGGGAGAGCAGTGTGCCACTGCTTTGCAC
AAGAAGGGGCGACCGTGGCTTTCACCTACGTGAAACCTCAAGAGGACAAA
GATGCAAAGGAGACACTTGAGATGTTGAGGAAGGCTAAGACCCCGGATGC
CAAAGACCCCATGGCAATATCAGCAGATTTAGGATTTGATGAGAATTGCA
AGAGGGTTGTCGACGAAGTTGTGAATGCTTATGGCAAGATTGATATTCTT
GTCAACAATGCAGCAGAGCAGTATGAATGTGGGTCGGTTGAGGATATTGA
TGAATCAAGACTTGAGAGAGTGTTTAGGACTAATATCTTCTCTTACTTCT
TCATGGCTAGGCATGCGCTGAAGCATATGAAGGCAGGGAGTTCAATAATC
AACACAACATCAGTGAATGCATACAAGGGGAACGCGAAG
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