CX288974

Overview
NameCX288974
Unique NameCX288974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288974 vs. ExPASy Swiss-Prot
Match: TDPZ3_MOUSE (TD and POZ domain-containing protein 3 OS=Mus musculus GN=Tdpoz3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.415e-17
Identity = 49/138 (35.51%), Postives = 73/138 (52.90%), Query Frame = 1
Query:  127 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYL 537
            LG +    + TD  +  +     AH+A+LAARSPVFR+MF H++KE   + I+I D+ +D  +  + +IY G   H    +    +L AADKY +  LK  C D L  ++  KN    L  A L    KLKS  + ++
Sbjct:  178 LGELWDNSLFTDCCLLVAGHEFKAHKAILAARSPVFRAMFEHEMKESLKNPIEIMDLDLDVFKEMMGFIYTGKAPHLHSHSMACDVLPAADKYGLVGLKVLCEDVLCRNLSVKNAAHTLILAELNSTEKLKSQALDFI 315          
BLAST of CX288974 vs. ExPASy Swiss-Prot
Match: MEL26_CAEEL (Protein maternal effect lethal 26 OS=Caenorhabditis elegans GN=mel-26 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.326e-16
Identity = 51/136 (37.50%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  133 RMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSH-DLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYL 537
            R+ ++ +  D  IN +     AH+AVLAARSPVF +M +H D  E + S + I DM  D     + YIY    +++      ALL AADKY + +LK  C   LVE+I+ +N    L    LY  PKL+   + Y+
Sbjct:  193 RLFSQELLCDFAINVNGKIIRAHKAVLAARSPVFNAMLTHQDTDEAKSSMMYINDMDYDVIYEMVYYIYCGRCNKDITDMATALLIAADKYRLEELKSHCEKYLVENINIENACSLLIIGDLYSAPKLRKRAVTYI 328          
BLAST of CX288974 vs. ExPASy Swiss-Prot
Match: TDPZ1_MOUSE (TD and POZ domain-containing protein 1 OS=Mus musculus GN=Tdpoz1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15
Identity = 46/141 (32.62%), Postives = 74/141 (52.48%), Query Frame = 1
Query:  127 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLGKF 546
            LG +    + TD  +  +     AH+A+LAARSPVFR+MF H++KE   + I I +++    +  + +IY G   H    +    +L AADKY +  LK  C D+L  ++  KN    L  A L+   KLK+  + ++  +
Sbjct:  178 LGELWENSLFTDCCLLVAGHEFRAHKAILAARSPVFRAMFEHEMKESLKTPIKIHNLNPQVFKEMMGFIYTGKAPHLHSHSMACDVLPAADKYGLVSLKVLCEDALCRNLSVKNATHTLILADLHSTEKLKTQALDFIAYY 318          
BLAST of CX288974 vs. ExPASy Swiss-Prot
Match: TDPZ4_MOUSE (TD and POZ domain-containing protein 4 OS=Mus musculus GN=Tdpoz4 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15
Identity = 44/148 (29.73%), Postives = 77/148 (52.03%), Query Frame = 1
Query:   97 KRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYL 537
            K +  T    +G +    + TD  +  +     AH+A+LAARSPVFR+MF H ++E+  + ++I D+     +  + +IY G + H    +    LL AAD+Y + DLK  C D+L  ++  +N    L  A L+    +K+  + ++
Sbjct:  168 KVTRCTLEDDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHQMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLKDLKVMCEDALCRNLSVENAAHTLIVADLHSTEHVKTQALDFI 315          
BLAST of CX288974 vs. ExPASy Swiss-Prot
Match: TDPZ5_MOUSE (TD and POZ domain-containing protein 5 OS=Mus musculus GN=Tdpoz5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14
Identity = 43/138 (31.16%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  127 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYL 537
            LG +    + TD  +  +     AH+A+LAARSPVFR+MF H+++E+  +  +I D+     +  + +IY G   H +  +    +L AADKY +  LK  C D+L  ++  +N  + L  A L++  +LK+  + ++
Sbjct:  178 LGELWENSLFTDCCLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLGNPTEIHDLDPKVFKEMMGFIYTGKAPHLQSHSMATDVLTAADKYGLEGLKVLCEDALCRNLSVENAAQTLILADLHKREQLKTQALYFI 315          
BLAST of CX288974 vs. ExPASy Swiss-Prot
Match: TDPZ2_MOUSE (TD and POZ domain-containing protein 2 OS=Mus musculus GN=Tdpoz2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  127 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLA--LLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYL 537
            LG++    + TD  +  +     AH+ +LAARSPVFR+MF H ++E+  +  +I ++     +  + +IY   +     +H +A  +L AADKY +  LK  C DSL  ++  +N    L  A L+   +LK+  + ++
Sbjct:  178 LGKLWENSLFTDCSLLVAGHEFRAHKVILAARSPVFRAMFEHQMEERLANCFEIQELDFQVFKEMMDFIYTG-KAPTLHSHSMACDVLAAADKYGLEGLKVICEDSLCRNLSVENAAHTLIVADLHSTEQLKTRALHFI 315          
BLAST of CX288974 vs. ExPASy Swiss-Prot
Match: SPOLA_DANRE (Speckle-type POZ protein-like A OS=Danio rerio GN=spopla PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 43/140 (30.71%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  127 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLGK 543
            LG +      TD  +        AH+++LAARSPVF +MF H+++E + + +DI D+  +  +  + +IY G   + E +    +LL AADKY +  LK  C ++L   +  +NV + L  A L+   +LK+  + ++ +
Sbjct:  190 LGNLWECSRFTDCSLYVGGQEFKAHKSILAARSPVFNAMFEHEMEESKKNRVDISDVEPEVFKEMMGFIYTGKAPNLEKMAD--SLLAAADKYALERLKVMCEEALCNSLSVENVADTLILADLHSAEQLKAQAIDFINR 327          
BLAST of CX288974 vs. ExPASy Swiss-Prot
Match: SPOLB_DANRE (Speckle-type POZ protein-like B OS=Danio rerio GN=spoplb PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.616e-13
Identity = 44/140 (31.43%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  127 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLGK 543
            LG +      TD  +        AH+++LAARSPVF +MF H ++E + + +DI D+  D  +  + +IY G   + E +     LL AADKY +  LK  C ++L   +  +NV + L  A L+   +LK+  + ++ +
Sbjct:  190 LGNLWEGSRFTDCSLFVGGQEFKAHKSILAARSPVFNAMFEHKMEESKKNRVDISDVEPDVFREMMVFIYTGKAPNLEKMADN--LLAAADKYALERLKVLCEEALCNSLSVENVADVLILADLHSAEQLKAQAIDFINR 327          
BLAST of CX288974 vs. ExPASy Swiss-Prot
Match: SPOP_XENTR (Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 43/138 (31.16%), Postives = 75/138 (54.35%), Query Frame = 1
Query:  127 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYL 537
            LG +      TD  +  +     AH+A+LAARSPVF +MF H+++E + + ++I D+  D  +  + +IY G   + + +     LL AADKY +  LK  C ++L  ++  +N  E L  A L+   +LK+  + ++
Sbjct:  190 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMAD--DLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFI 325          
BLAST of CX288974 vs. ExPASy Swiss-Prot
Match: SPOPB_XENLA (Speckle-type POZ protein B OS=Xenopus laevis GN=spop-B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 43/138 (31.16%), Postives = 75/138 (54.35%), Query Frame = 1
Query:  127 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYL 537
            LG +      TD  +  +     AH+A+LAARSPVF +MF H+++E + + ++I D+  D  +  + +IY G   + + +     LL AADKY +  LK  C ++L  ++  +N  E L  A L+   +LK+  + ++
Sbjct:  190 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMAD--DLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFI 325          
The following BLAST results are available for this feature:
BLAST of CX288974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TDPZ3_MOUSE4.415e-1735.51TD and POZ domain-containing protein 3 OS=Mus musc... [more]
MEL26_CAEEL8.326e-1637.50Protein maternal effect lethal 26 OS=Caenorhabditi... [more]
TDPZ1_MOUSE1.420e-1532.62TD and POZ domain-containing protein 1 OS=Mus musc... [more]
TDPZ4_MOUSE7.049e-1529.73TD and POZ domain-containing protein 4 OS=Mus musc... [more]
TDPZ5_MOUSE2.678e-1431.16TD and POZ domain-containing protein 5 OS=Mus musc... [more]
TDPZ2_MOUSE1.329e-1330.22TD and POZ domain-containing protein 2 OS=Mus musc... [more]
SPOLA_DANRE3.868e-1330.71Speckle-type POZ protein-like A OS=Danio rerio GN=... [more]
SPOLB_DANRE8.616e-1331.43Speckle-type POZ protein-like B OS=Danio rerio GN=... [more]
SPOP_XENTR1.470e-1231.16Speckle-type POZ protein OS=Xenopus tropicalis GN=... [more]
SPOPB_XENLA1.470e-1231.16Speckle-type POZ protein B OS=Xenopus laevis GN=sp... [more]

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Properties
Property NameValue
Genbank descriptionC02007E10SK IF1 Citrus clementina cDNA clone C02007E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288974 ID=CX288974; Name=CX288974; organism=Citrus clementina; type=EST; length=594bp
GGGAAATTCATCATTGACGTTGAATTTCTTGATTTGAAGATTGCACCTTC
AGACGGTGGTGAACCTTGTTCCATTTGGGCCGAAGGAATCACTCAAAAAC
GATCAAATGCAACAGCTCTTGCATCTCTTGGTAGAATGTTGACAGAAGGC
ATCCACACAGACATCATTATTAATGCTTCCAATGGAAGCACTGGAGCTCA
TCGTGCTGTGCTTGCTGCACGATCACCTGTTTTCCGCAGCATGTTTTCTC
ATGACTTGAAAGAGAAAGAACTCTCAACCATTGACATCCCTGACATGTCA
ATTGATGCCTGCCAAGCTTTTCTCAGTTATATTTATGGGAATATTGAACA
TGAAGAATTCTTAACCCATCGATTGGCTCTTCTTCGTGCAGCTGATAAAT
ATGACATCTGCGACTTGAAAGAGGCATGTCATGACAGCCTTGTAGAAGAT
ATTGATACAAAGAATGTACTTGAGAGACTCCAAAATGCATATCTCTATCA
ATTGCCAAAACTGAAGAGCAGCTGCATGCGGTATCTTGGGAAGTTTGGGA
AGATATTTGACATTCGAGACGACTTCAGTGTCTTCTTGCAATGT
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