CX288976

Overview
NameCX288976
Unique NameCX288976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig380 contig Ccv1_Contig380:477..1084. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL3_BOVIN (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Bos taurus GN=UCHL3 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.276e-40
Identity = 88/183 (48.09%), Postives = 122/183 (66.67%), Query Frame = 2
Query:   83 KRWLPLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELD 607
            +RWLPLEANP+V NQFL  LGL     +  DVYG+D ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N   ++ F++ S   KF + +A++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELD
Sbjct:    4 QRWLPLEANPEVTNQFLKQLGLHPNW-QFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESASMSPEERARYLENYDAIRVTHETSAHEGQTEAPNIDEKVDLHFIALVHVDGHLYELD 184          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL3_HUMAN (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Homo sapiens GN=UCHL3 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.622e-40
Identity = 87/183 (47.54%), Postives = 121/183 (66.12%), Query Frame = 2
Query:   83 KRWLPLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELD 607
            +RWLPLEANP+V NQFL  LGL     +  DVYG+D ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N   ++ F++ S   KF + + ++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELD
Sbjct:    4 QRWLPLEANPEVTNQFLKQLGLHPNW-QFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELD 184          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL3_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Mus musculus GN=Uchl3 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 8.649e-40
Identity = 87/183 (47.54%), Postives = 121/183 (66.12%), Query Frame = 2
Query:   83 KRWLPLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELD 607
            +RWLPLEANP+V NQFL  LGL     +  DVYG++ ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N   ++ F++ S   KF + + ++ P+ERA FLEN   + V H  +A  G TEA    + V+ HFI    VDG LYELD
Sbjct:    4 QRWLPLEANPEVTNQFLKQLGLHPNW-QFVDVYGMEPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERAKFLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELD 184          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL3_PIG (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Sus scrofa GN=UCHL3 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.927e-39
Identity = 87/183 (47.54%), Postives = 122/183 (66.67%), Query Frame = 2
Query:   83 KRWLPLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELD 607
            +RWLPLEANP+V NQFL  LGL     +  DVYG+D ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N  +++ F++ S   KF + +A++ P ERA +LE+   + V H  +A  G TEA    + V+ HFI    VDG LYELD
Sbjct:    4 QRWLPLEANPEVTNQFLKQLGLHPNW-QFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTPSVYFMKQTISNACGTIGLIHAIANNKNKMHFESGSTLKKFLEESASMSPDERARYLESYDAIPVTHETSAHEGQTEAPNIDEKVDLHFIALVHVDGHLYELD 184          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL3_RAT (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Rattus norvegicus GN=Uchl3 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.249e-38
Identity = 86/183 (46.99%), Postives = 119/183 (65.03%), Query Frame = 2
Query:   83 KRWLPLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELD 607
            +RWLPLEANP+V NQFL  LGL     +  DVYG++ ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N   ++ F++ S   KF + +  + P+ERA  LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELD
Sbjct:    4 QRWLPLEANPEVTNQFLKQLGLHPNW-QFVDVYGMEPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSALKKFLEESVAMSPEERARHLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELD 184          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL4_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L4 OS=Mus musculus GN=Uchl4 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.381e-37
Identity = 84/186 (45.16%), Postives = 121/186 (65.05%), Query Frame = 2
Query:   83 KRWLPLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIG---LLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELD 607
            +RWLPLEANP+V NQFL  LGL     +  DVYG++ ELL+++P+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIG   L+HA+ N   ++ F++ S   KF + + ++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELD
Sbjct:    4 QRWLPLEANPEVTNQFLKQLGLHPNW-QFVDVYGMESELLSIIPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGTIGLIHAIANNKDKVHFESGSTLKKFLEESVSMSPEERAKYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELD 187          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL1_HORSE (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Equus caballus GN=UCHL1 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.401e-36
Identity = 79/173 (45.66%), Postives = 106/173 (61.27%), Query Frame = 2
Query:   95 PLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDKK--EFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELD 607
            P+E NP+++N+ L  LG+ A +    DV GL++E L  VP P  A+L L+PLTAQ E  R+ Q  + K  E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELD
Sbjct:    5 PMEINPEMLNKVLARLGV-AGQWRFVDVLGLEEETLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELD 176          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL1_RAT (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Rattus norvegicus GN=Uchl1 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.801e-36
Identity = 79/173 (45.66%), Postives = 106/173 (61.27%), Query Frame = 2
Query:   95 PLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDKK--EFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELD 607
            P+E NP+++N+ L  LG+ A +    DV GL++E L  VP P  A+L L+PLTAQ E  R+ Q  + K  E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELD
Sbjct:    5 PMEINPEMLNKVLAKLGV-AGQWRFADVLGLEEETLGSVPSPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRVDDKVNFHFILFNNVDGHLYELD 176          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL1_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Mus musculus GN=Uchl1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.801e-36
Identity = 79/173 (45.66%), Postives = 106/173 (61.27%), Query Frame = 2
Query:   95 PLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDKK--EFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELD 607
            P+E NP+++N+ L  LG+ A +    DV GL++E L  VP P  A+L L+PLTAQ E  R+ Q  + K  E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELD
Sbjct:    5 PMEINPEMLNKVLAKLGV-AGQWRFADVLGLEEETLGSVPSPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRVDDKVNFHFILFNNVDGHLYELD 176          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL1_PIG (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Sus scrofa GN=UCHL1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.292e-35
Identity = 79/173 (45.66%), Postives = 105/173 (60.69%), Query Frame = 2
Query:   95 PLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDKK--EFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELD 607
            P+E NP+++N+ L  LG+ A      DV GL++E L  VP P  A+L L+PLTAQ E  R+ Q  + K  E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELD
Sbjct:    5 PMEINPEMLNKVLTRLGV-AGHWRFADVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELD 176          
The following BLAST results are available for this feature:
BLAST of CX288976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
UCHL3_BOVIN2.276e-4048.09Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_HUMAN6.622e-4047.54Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_MOUSE8.649e-4047.54Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_PIG1.927e-3947.54Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_RAT1.249e-3846.99Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL4_MOUSE1.381e-3745.16Ubiquitin carboxyl-terminal hydrolase isozyme L4 O... [more]
UCHL1_HORSE3.401e-3645.66Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_RAT5.801e-3645.66Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_MOUSE5.801e-3645.66Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_PIG1.292e-3545.66Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]

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Properties
Property NameValue
Genbank descriptionC02007E12SK IF1 Citrus clementina cDNA clone C02007E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288976 ID=CX288976; Name=CX288976; organism=Citrus clementina; type=EST; length=608bp
GACATTATTTTTTATTCGGTGTTTCTTCTGATCTAGCTAAAGAGAAAGCA
AAATGGCAGCAGTAGACGAGCGTCCTTCAGCTAAGAGGTGGCTCCCTCTT
GAAGCTAATCCCGATGTCATGAACCAGTTCCTTTGTGGCCTCGGTCTTCC
AGCTGAGGAGGCTGAGTGCTATGATGTGTATGGCTTGGATGATGAGCTCT
TGGCAATGGTTCCGCAACCTGTTCTTGCCGTGCTGTTTCTTTATCCCTTA
ACTGCACAGAGTGAAGAAGAAAGAAGGTTGCAGGACAATGACAAAAAGGA
ATTTAGCAAGAATGTTTATTTCATGAAGCAAACTGTTGGAAATGCTTGTG
GAACAATTGGACTTCTTCATGCTGTTGGGAACGTCACTTCGGAAATCAAG
TTTCAAGCTGATTCATTCTTCGATAAATTTTACAAGTCCACAGCGAACTT
GGATCCACAAGAGCGTGCAGCATTTCTTGAGAATGATAAGGAAATGGAAG
TTGCTCATTCGGTAGCAGCTTCAGCTGGTGACACAGAGGCTACCGATGAC
GTGAATGATCATTTTATCTGCTTCACCTGTGTGGATGGGGAACTTTATGA
ACTTGATG
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