CX288984 | Citrus Genome Database

Overview


Name	CX288984
Unique Name	CX288984
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	552

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig168	contig	Ccv1_Contig168:1..552.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF_PRUPE (Profilin OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 3.318e-66
Identity = 115/127 (90.55%), Postives = 124/127 (97.64%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVDDHL+CEIEGNHLSAAAIIGHDGSVWAQS  FPQLKPEE+TGI+NDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KK++ AL+IGIYDEPMTPGQCNMIVERLGDYL+
Sbjct:    1 MSWQAYVDDHLMCEIEGNHLSAAAIIGHDGSVWAQSATFPQLKPEEVTGILNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKSTLALLIGIYDEPMTPGQCNMIVERLGDYLV 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF2_AMBAR (Profilin-2 OS=Ambrosia artemisiifolia GN=A0418 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 9.654e-66
Identity = 117/127 (92.13%), Postives = 122/127 (96.06%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVDDHL+CEIEGNHLSAAAIIGHDG VWAQS  FPQ+KPEEITGIMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKT+ ALIIGIYDEPM PGQCNMIVERLGDYL+
Sbjct:    1 MSWQAYVDDHLMCEIEGNHLSAAAIIGHDGVVWAQSATFPQVKPEEITGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTTMALIIGIYDEPMAPGQCNMIVERLGDYLL 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF2_MALDO (Profilin-2 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.647e-65
Identity = 114/127 (89.76%), Postives = 123/127 (96.85%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVDDHL+CEIEGNHLSAAAIIGH+GSVWAQS  FPQLKPEE+TGIMNDFNEPG+LAPTGLYLGGTKYMVIQGEPG VIRGKKGPGGVT+KK++ AL+IGIYDEPMTPGQCNM+VERLGDYLI
Sbjct:    1 MSWQAYVDDHLMCEIEGNHLSAAAIIGHNGSVWAQSATFPQLKPEEVTGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGVVIRGKKGPGGVTVKKSTMALLIGIYDEPMTPGQCNMVVERLGDYLI 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF2_HEVBR (Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 6.257e-65
Identity = 116/127 (91.34%), Postives = 122/127 (96.06%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVDDHL+CEIEGNHLSAAAIIG DGSVWAQS NFPQ K EEITGIM+DF+EPGTLAPTGLY+GGTKYMVIQGEPGAVIRGKKGPGGVT+KKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLI
Sbjct:    1 MSWQAYVDDHLMCEIEGNHLSAAAIIGQDGSVWAQSANFPQFKSEEITGIMSDFHEPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLI 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF1_AMBAR (Profilin-1 OS=Ambrosia artemisiifolia GN=D106 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 6.257e-65
Identity = 115/127 (90.55%), Postives = 122/127 (96.06%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVDDHL+CEIEGNHLSAAAIIGHDG VWAQS  FPQ+KPEEITGIMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKT+ +LIIGIYDEPMTPGQCNM+VER GDYL+
Sbjct:    1 MSWQAYVDDHLMCEIEGNHLSAAAIIGHDGVVWAQSATFPQVKPEEITGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTTMSLIIGIYDEPMTPGQCNMLVERPGDYLL 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF_FRAAN (Profilin OS=Fragaria ananassa PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 2.378e-64
Identity = 113/127 (88.98%), Postives = 121/127 (95.28%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVDDHL+CEIEGNHLSAAAIIG DGSVWAQS  FPQLKPEE+TGI+ DF+EPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KKT+ AL+IGIYDEPMTPGQCNMIVERLGDYL+
Sbjct:    1 MSWQTYVDDHLMCEIEGNHLSAAAIIGQDGSVWAQSATFPQLKPEEVTGIVRDFDEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTTLALLIGIYDEPMTPGQCNMIVERLGDYLV 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF1_PHAVU (Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 5.297e-64
Identity = 112/127 (88.19%), Postives = 121/127 (95.28%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVDDHLLCEIEGNHL+ AAI+G DGSVWA+S +FPQ KPEEITGIMNDFNEPGTLAPTGLY+GGTKYMVIQGEPG+VIRGKKGPGGVT+KKT+ AL+IGIYDEPMTPGQCNMIVERLGDYLI
Sbjct:    1 MSWQTYVDDHLLCEIEGNHLTHAAILGQDGSVWAKSASFPQFKPEEITGIMNDFNEPGTLAPTGLYIGGTKYMVIQGEPGSVIRGKKGPGGVTVKKTNLALVIGIYDEPMTPGQCNMIVERLGDYLI 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF1_SOYBN (Profilin-1 OS=Glycine max GN=PRO1 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 6.918e-64
Identity = 114/127 (89.76%), Postives = 120/127 (94.49%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVDDHLLC+IEGNHL+ AAIIG DGSVWAQS +FPQ KPEEIT IMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KKT AALIIGIYDEPMTPGQCNM+VER GDYLI
Sbjct:    1 MSWQAYVDDHLLCDIEGNHLTHAAIIGQDGSVWAQSTDFPQFKPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTGAALIIGIYDEPMTPGQCNMVVERPGDYLI 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF2_SOYBN (Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.180e-63
Identity = 114/127 (89.76%), Postives = 119/127 (93.70%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVDDHLLC IEGNHL+ AAIIG DGSVW QS +FPQ KPEEIT IMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KKT AALIIGIYDEPMTPGQCNM+VERLGDYLI
Sbjct:    1 MSWQAYVDDHLLCGIEGNHLTHAAIIGQDGSVWLQSTDFPQFKPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTGAALIIGIYDEPMTPGQCNMVVERLGDYLI 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF1_RICCO (Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.180e-63
Identity = 113/127 (88.98%), Postives = 119/127 (93.70%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVDDHL+CEIEGNHL++AAIIG DGSVWAQS  FPQ KPEEIT IMNDFNEPG+LAPTGLYL GTKYMVIQGEPGAVIRGKKGPGGVT+KKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLI
Sbjct:    1 MSWQTYVDDHLMCEIEGNHLTSAAIIGQDGSVWAQSSTFPQFKPEEITAIMNDFNEPGSLAPTGLYLSGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLI 127

The following BLAST results are available for this feature:

BLAST of CX288984 vs. ExPASy Swiss-Prot

BLAST of CX288984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90


Match Name	E-value	Identity	Description
PROF_PRUPE	3.318e-66	90.55	Profilin OS=Prunus persica PE=1 SV=1	[more]
PROF2_AMBAR	9.654e-66	92.13	Profilin-2 OS=Ambrosia artemisiifolia GN=A0418 PE=...	[more]
PROF2_MALDO	1.647e-65	89.76	Profilin-2 OS=Malus domestica PE=1 SV=1	[more]
PROF2_HEVBR	6.257e-65	91.34	Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1	[more]
PROF1_AMBAR	6.257e-65	90.55	Profilin-1 OS=Ambrosia artemisiifolia GN=D106 PE=1...	[more]
PROF_FRAAN	2.378e-64	88.98	Profilin OS=Fragaria ananassa PE=1 SV=1	[more]
PROF1_PHAVU	5.297e-64	88.19	Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1	[more]
PROF1_SOYBN	6.918e-64	89.76	Profilin-1 OS=Glycine max GN=PRO1 PE=1 SV=1	[more]
PROF2_SOYBN	1.180e-63	89.76	Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1	[more]
PROF1_RICCO	1.180e-63	88.98	Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C02007F10SK IF1 Citrus clementina cDNA clone C02007F10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX288984 ID=CX288984; Name=CX288984; organism=Citrus clementina; type=EST; length=552bp
GTTGTTTCAACGCTATATCTCCGTGTCCAGTGTCTCCTTTTGTCTAGCTC
TTCACAAAATCTCTTCTCGACAAAAATTAAGTCTTAAACACACTCATTTG
TAAAAAGGCTTCAGGAAAAATAAAAAAAAATTCACAGAGAAATCAGAGGA
ATCTTCAAAGCAGAAAAAGATGTCGTGGCAAGCTTACGTCGATGATCATC
TGTTGTGTGAAATTGAGGGTAACCATCTCTCAGCTGCCGCTATCATCGGC
CACGACGGCAGCGTTTGGGCCCAGAGTGAAAACTTCCCTCAGTTAAAACC
TGAGGAAATAACTGGTATCATGAATGACTTTAATGAACCTGGAACACTAG
CACCAACTGGACTGTATCTTGGTGGCACAAAATATATGGTGATCCAGGGT
GAGCCAGGTGCTGTCATCCGAGGGAAGAAGGGCCCTGGTGGTGTTACCAT
CAAGAAGACCAGTGCGGCCTTAATCATTGGAATCTATGATGAGCCGATGA
CCCCTGGGCAGTGCAACATGATTGTTGAAAGGCTTGGTGATTATCTCATT
GA