CX288987

Overview
NameCX288987
Unique NameCX288987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length156
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1071 contig Ccv1_Contig1071:440..595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288987 vs. ExPASy Swiss-Prot
Match: ATG4_MEDTR (Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 2
Query:   26 DREYDEILHLFGDSETSPLSIHNLF*AGKAYGLAAGSWVGPYA 154
            D+EY +IL LFGDSE +  SIHNL  AGK YGLA GSWVGPYA
Sbjct:  205 DKEYIDILQLFGDSEAAAFSIHNLLQAGKGYGLAVGSWVGPYA 247          
BLAST of CX288987 vs. ExPASy Swiss-Prot
Match: ATG4A_ORYSJ (Cysteine protease ATG4A OS=Oryza sativa subsp. japonica GN=ATG4A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.608e-11
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 2
Query:   23 FDREYDEILHLFGDSETSPLSIHNLF*AGKAYGLAAGSWVGPYA 154
            +  EY  ILH+FGDSE    SIHNL  AGK+YGLAAGSWVGPYA
Sbjct:  191 YSPEYIGILHMFGDSEACAFSIHNLLQAGKSYGLAAGSWVGPYA 234          
BLAST of CX288987 vs. ExPASy Swiss-Prot
Match: ATG4A_ORYSI (Cysteine protease ATG4A OS=Oryza sativa subsp. indica GN=ATG4A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.608e-11
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 2
Query:   23 FDREYDEILHLFGDSETSPLSIHNLF*AGKAYGLAAGSWVGPYA 154
            +  EY  ILH+FGDSE    SIHNL  AGK+YGLAAGSWVGPYA
Sbjct:  190 YSPEYIGILHMFGDSEACAFSIHNLLQAGKSYGLAAGSWVGPYA 233          
BLAST of CX288987 vs. ExPASy Swiss-Prot
Match: ATG4B_ARATH (Cysteine protease ATG4b OS=Arabidopsis thaliana GN=ATG4B PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.407e-11
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 2
Query:   26 DREYDEILHLFGDSETSPLSIHNLF*AGKAYGLAAGSWVGPYA 154
            D +Y EIL LFGD+E S  SIHNL  AG++YGLAAGSWVGPYA
Sbjct:  204 DEKYLEILELFGDTEASAFSIHNLILAGESYGLAAGSWVGPYA 246          
BLAST of CX288987 vs. ExPASy Swiss-Prot
Match: ATG4B_ORYSJ (Cysteine protease ATG4B OS=Oryza sativa subsp. japonica GN=ATG4B PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.589e-11
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 2
Query:   23 FDREYDEILHLFGDSETSPLSIHNLF*AGKAYGLAAGSWVGPYA 154
            ++ EY  ILH+FGDSE    SIHNL  AG +YGLAAGSWVGPYA
Sbjct:  194 YNPEYIGILHMFGDSEACAFSIHNLLQAGNSYGLAAGSWVGPYA 237          
BLAST of CX288987 vs. ExPASy Swiss-Prot
Match: ATG4B_ORYSI (Cysteine protease ATG4B OS=Oryza sativa subsp. indica GN=ATG4B PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.589e-11
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 2
Query:   23 FDREYDEILHLFGDSETSPLSIHNLF*AGKAYGLAAGSWVGPYA 154
            ++ EY  ILH+FGDSE    SIHNL  AG +YGLAAGSWVGPYA
Sbjct:  194 YNPEYIGILHMFGDSEACAFSIHNLLQAGNSYGLAAGSWVGPYA 237          
The following BLAST results are available for this feature:
BLAST of CX288987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ATG4_MEDTR1.529e-1172.09Cysteine protease ATG4 OS=Medicago truncatula GN=A... [more]
ATG4A_ORYSJ2.608e-1170.45Cysteine protease ATG4A OS=Oryza sativa subsp. jap... [more]
ATG4A_ORYSI2.608e-1170.45Cysteine protease ATG4A OS=Oryza sativa subsp. ind... [more]
ATG4B_ARATH3.407e-1172.09Cysteine protease ATG4b OS=Arabidopsis thaliana GN... [more]
ATG4B_ORYSJ7.589e-1168.18Cysteine protease ATG4B OS=Oryza sativa subsp. jap... [more]
ATG4B_ORYSI7.589e-1168.18Cysteine protease ATG4B OS=Oryza sativa subsp. ind... [more]
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Properties
Property NameValue
Genbank descriptionC02007G01SK IF1 Citrus clementina cDNA clone C02007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288987 ID=CX288987; Name=CX288987; organism=Citrus clementina; type=EST; length=156bp
AGAAAACCTTTGCAGAAGCGCATTTGATCGTGAATATGATGAGATCTTGC
ACCTTTTTGGTGATTCTGAGACATCACCTTTATCCATTCACAATCTTTTT
TAAGCTGGAAAGGCTTATGGCCTTGCAGCTGGATCATGGGTTGGCCCATA
TGCCAT
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