CX288988

Overview
NameCX288988
Unique NameCX288988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288988_ssr64 microsatellite CX288988_ssr64:64..75. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9969 contig Ccv1_Contig9969:333..928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288988 vs. ExPASy Swiss-Prot
Match: RBM25_MOUSE (RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.051e-13
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:  307 DEDNNRTKDEHKETILDRDRDREHGLD-KVKTPDNKKLLDAKQLIDMIPKTKEELLSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYI 594
            DED++    + K   LD   D ++     V T + +K +  K LI+ IP  K EL +Y ++W++ D   +  R+RPWI+KKI E++GEEE TLVD++
Sbjct:  698 DEDSDDVPRKRKLVPLDYGEDDKNATKGTVNTEEKRKHI--KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFV 792
[Close]
BLAST of CX288988 vs. ExPASy Swiss-Prot
Match: RBM25_HUMAN (RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 5.051e-13
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:  307 DEDNNRTKDEHKETILDRDRDREHGLD-KVKTPDNKKLLDAKQLIDMIPKTKEELLSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYI 594
            DED++    + K   LD   D ++     V T + +K +  K LI+ IP  K EL +Y ++W++ D   +  R+RPWI+KKI E++GEEE TLVD++
Sbjct:  700 DEDSDDVPRKRKLVPLDYGEDDKNATKGTVNTEEKRKHI--KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFV 794
The following BLAST results are available for this feature:
BLAST of CX288988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RBM25_MOUSE5.051e-1339.18RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE... [more]
RBM25_HUMAN5.051e-1339.18RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE... [more]
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Properties
Property NameValue
Genbank descriptionC02007G02SK IF1 Citrus clementina cDNA clone C02007G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288988 ID=CX288988; Name=CX288988; organism=Citrus clementina; type=EST; length=596bp
CGGCACGAGGGTCTTGTTGGCTCTGGAAAACGTACAGCTGTCCCTTCTGT
TTTCCATGTTGAGGATGATGATGATGCCGACAAGGATAAAAAGATGAGGC
CGTTGGTTCCCATTGATTACTCAACTGAGGAACTGCAGGCAGCCCAACCT
CATGTCTCTGGGGCAAACCCTCCGAATTTGGCTGCAGCAGCAGAATTTGC
GAAGCGTATTTCAAATGCTAATTCCAAAAAAGAGAAATCTGATGCAAAAC
GAGAAAGAAGTACACGCTTGCACGATAGGTCAAGCCAAAGGGAGACGGAC
CGAAGTGATGAGGATAATAATCGCACCAAAGATGAGCACAAAGAGACTAT
TCTTGACAGGGACAGAGATCGGGAACATGGTTTGGATAAAGTGAAGACGC
CAGATAACAAGAAACTTTTGGATGCAAAACAATTGATTGATATGATCCCT
AAGACAAAGGAAGAGTTGCTCTCATATGAGATAAATTGGGCCGTGTACGA
CAAGCATGAGCTGCATGAGAGAATGAGACCGTGGATTTCAAAGAAGATTA
CAGAGTTTCTCGGAGAAGAAGAAACTACTTTGGTAGACTATATTGT
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