CX288990

Overview
NameCX288990
Unique NameCX288990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9478 contig Ccv1_Contig9478:94..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288990 vs. ExPASy Swiss-Prot
Match: Y4648_ARATH (Uncharacterized protein At4g26480 OS=Arabidopsis thaliana GN=At4g26480 PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.334e-37
Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 3
Query:  252 ELDATEMKEHSELSKRKFDRIIFNFPHAG--FHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKRHIEELARKHSVLRLDCVQFRKEDYPGYSNKKGAG 584
            E+D   M   + LS +++DRI+FNFPHAG  F G+E     I  H  LV GF  NA  ML   GE+H++HKTT PF    I++L +   +  L   +F    YPGY  K+G+G
Sbjct:   76 EVDVHTMSFDNSLSLQRYDRIVFNFPHAGSRFFGRELSSRAIESHKELVRGFLENAKEMLEEDGEIHITHKTTYPFSDWGIKKLGKGEGLKLLKKSKFELSHYPGYITKRGSG 188          

HSP 2 Score: 78.5666 bits (192), Expect = 5.334e-37
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 2
Query:   44 WIMHYSSKHQILLVGEGDFSFSFALLQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGV 256
            WI HYSS H+ILLVGEG+FSFS  L   FGSA NI A+SLDS + +  K+ +A  N++ LK+ G  I H V
Sbjct:    7 WIRHYSSTHKILLVGEGNFSFSLCLASAFGSAMNITATSLDSEDELSIKYMDAVDNINILKRYGCDIQHEV 77          
BLAST of CX288990 vs. ExPASy Swiss-Prot
Match: YC6D_SCHPO (UPF0617 protein C1919.13c OS=Schizosaccharomyces pombe GN=SPCC1919.13c PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 7.477e-17
Identity = 33/111 (29.73%), Postives = 61/111 (54.95%), Query Frame = 3
Query:  252 ELDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKRHIEELARKHSVLRLDCVQFRKEDYPGYSNKKGAG 584
            E+DAT++  H +L  +KFD I +NFPH+G  G ++ D  I  +  ++  FF+ +  +L  +G + ++   T P+   +++ LA+      L   +F    YP YS+++  G
Sbjct:  120 EIDATKLHLHKKLKTQKFDTIFWNFPHSG-KGIKDQDRNILDNQKMLLAFFKASKFLLSEKGVIVITLAETKPYTLWNLKGLAKDAGYTSLMTEKFDSSFYPEYSHRRTIG 229          

HSP 2 Score: 44.669 bits (104), Expect = 7.477e-17
Identity = 21/72 (29.17%), Postives = 43/72 (59.72%), Query Frame = 2
Query:   44 WIMHYSSKHQILLVGEGDFSFSFA-LLQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGV 256
            +++ +   ++ LL+GEG+FSF+F+ LL    S   + A+S DS E + +K+ +A   +  ++  G  ++H +
Sbjct:   50 YVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSSEGFVLATSYDSKEDLKQKYPDAAEYISKIEINGGKVMHEI 121          
The following BLAST results are available for this feature:
BLAST of CX288990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4648_ARATH5.334e-3742.48Uncharacterized protein At4g26480 OS=Arabidopsis t... [more]
YC6D_SCHPO7.477e-1729.73UPF0617 protein C1919.13c OS=Schizosaccharomyces p... [more]
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Properties
Property NameValue
Genbank descriptionC02007G05SK IF1 Citrus clementina cDNA clone C02007G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288990 ID=CX288990; Name=CX288990; organism=Citrus clementina; type=EST; length=585bp
GCACGAGGGTTTTACAGAAAAAGATGAAAAAGAAGAAGAGAAATGGATCA
TGCATTATTCATCAAAGCATCAAATATTGTTGGTGGGTGAAGGAGATTTC
TCGTTTTCTTTTGCTTTATTGCAGAAATTTGGCTCTGCTTCTAACATCTG
CGCTTCTTCTCTTGATTCCTATGAAACTGTGGTTAAGAAATTCAAGGAGG
CACGGTCAAATTTGGACACCCTAAAGAAGCTGGGAGCATCCATTATCCAT
GGAGTTGGATGCAACTGAAATGAAGGAACATTCTGAATTGAGCAAGCGGA
AGTTTGATAGAATAATCTTCAACTTCCCCCATGCTGGCTTTCATGGAAAG
GAAGAAGACGACGAAGTTATTCGAATGCATATGAGCCTCGTGGAAGGTTT
CTTCAGAAATGCAAGTGGTATGCTAAGGCCTCGTGGTGAAGTTCATGTAA
GCCACAAGACAACAGCTCCATTTTGCAAACGGCATATCGAGGAACTCGCT
AGGAAACACTCTGTGTTAAGACTCGACTGTGTGCAGTTTAGAAAAGAAGA
CTACCCAGGTTACAGTAACAAGAAAGGAGCTGGTT
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