CX288991

Overview
NameCX288991
Unique NameCX288991
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14273 contig Ccv1_Contig14273:528..1125. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288991 vs. ExPASy Swiss-Prot
Match: APG2_ARATH (GDSL esterase/lipase APG OS=Arabidopsis thaliana GN=APG PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.941e-43
Identity = 65/91 (71.43%), Postives = 79/91 (86.81%), Query Frame = 3
Query:   96 VKNMYGLGARKFGVTSLPPLGCLPAARTLFGYHESGCVSRINTDAQQFNKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLVQSPSKSGIAQ 368
            +K +Y +GARK GVTSLPP GCLPAARTLFG+HE GCVSR+NTDAQ FNKK+++AA+ LQKQ  DLKIV+FDI+ P+YDLVQ+PSKSG  +
Sbjct:  202 IKQVYAVGARKIGVTSLPPTGCLPAARTLFGFHEKGCVSRLNTDAQNFNKKLNAAASKLQKQYSDLKIVVFDIYSPLYDLVQNPSKSGFTE 292          

HSP 2 Score: 50.8322 bits (120), Expect = 1.941e-43
Identity = 24/42 (57.14%), Postives = 25/42 (59.52%), Query Frame = 2
Query:  473 GFVEAXXXXXXXXXXXXXXFLCNPKSPGTCSNASQYVFWDSV 598
            GF EA               LCNPKS GTCSNA+QYVFWDSV
Sbjct:  289 GFTEATKGCCGTGTVETTSLLCNPKSFGTCSNATQYVFWDSV 330          
BLAST of CX288991 vs. ExPASy Swiss-Prot
Match: GDL78_ARATH (GDSL esterase/lipase At5g22810 OS=Arabidopsis thaliana GN=At5g22810 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.384e-23
Identity = 46/91 (50.55%), Postives = 68/91 (74.73%), Query Frame = 3
Query:   96 VKNMYGLGARKFGVTSLPPLGCLPAARTLFGYHESGCVSRINTDAQQFNKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLVQSPSKSGIAQ 368
            ++N+Y LGAR+ GVT+LPPLGCLPAA T+ G HE GC  ++N DA  FN K+++ + +L++ L  L +V+FDI++P+YDL   PS+ G A+
Sbjct:  195 IQNLYSLGARRIGVTTLPPLGCLPAAITVVGPHEGGCSEKLNNDAISFNNKLNTTSQDLKRNLIGLNLVVFDIYQPLYDLATRPSEFGFAE 285          
BLAST of CX288991 vs. ExPASy Swiss-Prot
Match: GDL73_ARATH (GDSL esterase/lipase At5g03820 OS=Arabidopsis thaliana GN=At5g03820 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.955e-21
Identity = 47/94 (50.00%), Postives = 68/94 (72.34%), Query Frame = 3
Query:   96 VKNMYGLGARKFGVTSLPPLGCLPAARTLFGY--HESGCVSRINTDAQQFNKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLVQSPSKSGIAQT 371
            V+N+Y LGARK GVT+LPPLGCLPAA TLFG   + + CV R+N DA  FN K+++ + NL   LP LK+V+FDI+ P+ ++  +P ++G  ++
Sbjct:  202 VQNLYDLGARKIGVTTLPPLGCLPAAITLFGETGNNNTCVERLNQDAVSFNTKLNNTSMNLTNNLPGLKLVVFDIYNPLLNMAMNPVENGFFES 295          
BLAST of CX288991 vs. ExPASy Swiss-Prot
Match: GDL72_ARATH (GDSL esterase/lipase At5g03810 OS=Arabidopsis thaliana GN=At5g03810 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.955e-21
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 3
Query:   96 VKNMYGLGARKFGVTSLPPLGCLPAARTLF-GYHESGCVSRINTDAQQFNKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLVQSPSKSGIAQT 371
            V+N+YGLGAR+ GVT+LPPLGCLPAA TLF G   + CV R+N DA  FN K+++ + NL   LP LK+V+FDI+ P+ ++V +P + G  ++
Sbjct:  202 VQNLYGLGARRIGVTTLPPLGCLPAAITLFGGVGNNMCVERLNQDAVSFNTKLNNTSINLTNNLPGLKLVVFDIYNPLLNMVINPVEYGFFES 294          
BLAST of CX288991 vs. ExPASy Swiss-Prot
Match: GDL59_ARATH (GDSL esterase/lipase At3g53100 OS=Arabidopsis thaliana GN=At3g53100 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.341e-18
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 3
Query:   96 VKNMYGLGARKFGVTSLPPLGCLPAARTLFGYHESGCVSRINTDAQQFNKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLVQSPSKSGIAQT 371
            ++N+Y LGAR+ GV SLPP+GCLPAA TLFG     CV R+N DA  FN K+ +    L  +   L++V F++++P  D++ +P+ +G  +T
Sbjct:  201 IQNLYELGARRIGVISLPPMGCLPAAITLFGAGNKSCVERLNNDAIMFNTKLENTTRLLMNRHSGLRLVAFNVYQPFLDIITNPTDNGFFET 292          
BLAST of CX288991 vs. ExPASy Swiss-Prot
Match: GDL90_ARATH (GDSL esterase/lipase At5g42170 OS=Arabidopsis thaliana GN=At5g42160/At5g42170 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 3
Query:   96 VKNMYGLGARKFGVTSLPPLGCLPAARTLFGYHESGCVSRINTDAQQFNKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLVQSPSKSG 359
            V  +YGLGAR+ GV S  P+GC+PAARTL G  +  C  ++N  A+ FN K+S     L K+LPD ++V+ D+   + D++++P   G
Sbjct:  219 VSALYGLGARRIGVFSAVPVGCVPAARTLRGKLKRRCSEKLNEVARNFNAKISPTLEALGKELPDSRVVLIDVCDTLNDMIENPKNYG 306          
BLAST of CX288991 vs. ExPASy Swiss-Prot
Match: GDL5_ARATH (GDSL esterase/lipase At1g23500 OS=Arabidopsis thaliana GN=At1g23500 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 38/95 (40.00%), Postives = 54/95 (56.84%), Query Frame = 3
Query:   93 VVKNMYGLGARKFGVTSLPPLGCLPAARTLFGYHESGCVSRINTDAQQFNKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLVQSPSKSGIAQTWD 377
            ++K++Y +GARKF V    PLGCLP AR   G   + C+  IN  A  FN+K+S+   NL   LP  K V  D++ P+ +L+ +P  SG     D
Sbjct:  204 LLKSLYAMGARKFAVLGTLPLGCLPGARHTGGNFGNICLVPINQVAAIFNQKLSAKLNNLHTILPGAKFVYVDMYNPLLNLINNPRASGFIDVAD 298          
BLAST of CX288991 vs. ExPASy Swiss-Prot
Match: GDL52_ARATH (GDSL esterase/lipase At3g14820 OS=Arabidopsis thaliana GN=At3g14820 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = 3
Query:   96 VKNMYGLGARKFGVTSLPPLGCLPAARTLFGYHESGCVSRINTDAQQFNKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLVQSPSKSG 359
            +K +  LGA+  G+ S  P+GCLPA RTLFG  E  C  ++N  A  FN K+SS+   L+K+LP  +++  D++  + D++++P+  G
Sbjct:  201 IKELSELGAKNIGLFSGVPVGCLPAQRTLFGGFERKCYEKLNNMALHFNSKLSSSLDTLKKELPS-RLIFIDVYDTLLDIIKNPTNYG 287          
BLAST of CX288991 vs. ExPASy Swiss-Prot
Match: EXL3_ARATH (GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana GN=EXL3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.051e-13
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 3
Query:   96 VKNMYGLGARKFGVTSLPPLGCLPAARTLFGYHESGCVSRINTDAQQFNKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLVQSPSKSG 359
            V  +YG G R+  V   PP+GC+P+ RTL G     C    N  A+ FN K+S    +L+K LP +K +  +I+ P++D++Q+P+  G
Sbjct:  214 VTKLYGYGVRRVAVFGAPPIGCVPSQRTLGGGILRDCADNYNEAAKLFNSKLSPKLDSLRKTLPGIKPIYINIYDPLFDIIQNPANYG 301          
BLAST of CX288991 vs. ExPASy Swiss-Prot
Match: GDL55_ARATH (GDSL esterase/lipase At3g43550 OS=Arabidopsis thaliana GN=At3g43550 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 37/95 (38.95%), Postives = 58/95 (61.05%), Query Frame = 3
Query:   78 DFGCFVVKNMYGLGARKFGVTSLPPLGCLPAARTLF-GYHESGCVSRINTDAQQFNKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLVQSPSKSG 359
            D     V+ ++ LGARK GV S  P+GC+P  RT+F G+   GC   +N  A+QFN ++S A  +L K+L D  I+  +++  ++D++Q P K G
Sbjct:  193 DSAVHFVRELHKLGARKIGVFSAVPVGCVPLQRTVFGGFFTRGCNQPLNNMAKQFNARLSPALDSLDKEL-DGVIIYINVYDTLFDMIQHPKKYG 286          
The following BLAST results are available for this feature:
BLAST of CX288991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
APG2_ARATH1.941e-4371.43GDSL esterase/lipase APG OS=Arabidopsis thaliana G... [more]
GDL78_ARATH5.384e-2350.55GDSL esterase/lipase At5g22810 OS=Arabidopsis thal... [more]
GDL73_ARATH2.955e-2150.00GDSL esterase/lipase At5g03820 OS=Arabidopsis thal... [more]
GDL72_ARATH2.955e-2151.61GDSL esterase/lipase At5g03810 OS=Arabidopsis thal... [more]
GDL59_ARATH2.341e-1843.48GDSL esterase/lipase At3g53100 OS=Arabidopsis thal... [more]
GDL90_ARATH7.049e-1542.05GDSL esterase/lipase At5g42170 OS=Arabidopsis thal... [more]
GDL5_ARATH3.868e-1340.00GDSL esterase/lipase At1g23500 OS=Arabidopsis thal... [more]
GDL52_ARATH3.868e-1338.64GDSL esterase/lipase At3g14820 OS=Arabidopsis thal... [more]
EXL3_ARATH5.051e-1337.50GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana ... [more]
GDL55_ARATH1.470e-1238.95GDSL esterase/lipase At3g43550 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC02007G06SK IF1 Citrus clementina cDNA clone C02007G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288991 ID=CX288991; Name=CX288991; organism=Citrus clementina; type=EST; length=598bp
GCCATCTTTACTGCTGTTTCTGTTAATTTTTCAAAGTTAAACTGCTGATT
TCTTAGAAAAAGTTGAAACTGATAATGGATTTTGGCTGCTTTGTTGTAAA
GAACATGTATGGATTGGGGGCAAGAAAATTTGGAGTGACTTCACTGCCAC
CATTGGGTTGCCTTCCAGCAGCAAGAACTTTATTTGGATATCACGAGAGC
GGCTGTGTCTCTAGAATCAATACTGATGCTCAACAATTTAACAAGAAGGT
CAGCTCCGCAGCAACAAATCTTCAAAAGCAACTTCCTGATCTGAAAATTG
TGATTTTCGACATTTTCAAGCCAATCTATGACCTTGTCCAGTCCCCTTCA
AAATCTGGTATTGCACAAACTTGGGATCCCATTTAGCTGGTCATTTGAAA
CATGATACAAGCATTGGCTTAGCCCTTATGCCCTTATAATTAACGTTAGT
CGATACCTTCCATGTTTTTTTAGGCTTCGTGGAGGCAACAAGAGGTTGCT
GTGGAACAGGAACTGTAGAAACAACTGTCTTTCTGTGCAATCCAAAGTCG
CCTGGAACATGCTCCAATGCCTCTCAGTATGTGTTCTGGGACAGTGTT
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