CX288992

Overview
NameCX288992
Unique NameCX288992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length640
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig432 contig Ccv1_Contig432:57..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.182e-47
Identity = 89/187 (47.59%), Postives = 126/187 (67.38%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDT-EELKDFIASLLINPVPI 558
            + YAK+AM   V+ Y  EAKW HQNY PT +E+   AL +S +  L+  +FVGMG+++T E+F+W  S+P+ I+AS  + R M+D+  HKF   R    S++ECY+ QYG T +EAY+EF K + ++WKD+NEE L+PT +P P+L R LNL R  DV+Y+  DGYT   +  K  I SLLI+P+ I
Sbjct:  369 VEYAKKAMIRLVQAYLLEAKWTHQNYKPTFEEFRDNALPTSGYAMLAITAFVGMGEVITPETFKWAASDPKIIKASTIICRFMDDIAEHKFNHRREDDCSAIECYMKQYGVTAQEAYNEFNKHIESSWKDVNEEFLKPTEMPTPVLCRSLNLARVMDVLYREGDGYTHVGKAAKGGITSLLIDPIQI 555          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: CASS_RICCO (Casbene synthase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.091e-43
Identity = 81/184 (44.02%), Postives = 123/184 (66.85%), Query Frame = 1
Query:    7 YAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDTEELKDFIASLLINPVPI 558
            Y +EA +  V+ Y+ EA W  +  +P+ D+Y+    +++  P +ST SF+G+ +I     F+WL +NP+   AS A  RL+ND+ SH  EQ RGHVAS ++CY+NQ+G +++EA    +K  ++ WK+INEEC+R + V V  LMRI+NL R  DV YKY DGYTD+++LK F+  L ++P+ I
Sbjct:  418 YGREAFQELVRGYYLEAVWRDEGKIPSFDDYLYNGSMTTGLPLVSTASFMGVQEITGLNEFQWLETNPKLSYASGAFIRLVNDLTSHVTEQQRGHVASCIDCYMNQHGVSKDEAVKILQKMATDCWKEINEECMRQSQVSVGHLMRIVNLARLTDVSYKYGDGYTDSQQLKQFVKGLFVDPISI 601          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: DCS1_GOSAR ((+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.688e-42
Identity = 86/187 (45.99%), Postives = 119/187 (63.64%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDT-EELKDFIASLLINPVPI 558
            + YAK AM    + Y  EAKW  QNY P+ +E+   AL +  +  L+  SFVGMGDIVT E+F+W  S+P+ I+AS  + R M+D+  HKF+  R    S++ECY+ +YG T +EAY  F K V +AWKD+N+E L+PT +P  +L R LNL R  DV+Y+  DGYT   +  K  I SLLI P+ +
Sbjct:  368 VEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: DCS2_GOSAR ((+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.021e-41
Identity = 85/187 (45.45%), Postives = 119/187 (63.64%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDT-EELKDFIASLLINPVPI 558
            + YAK AM    + Y  EA+W  QNY P+ +E+   AL +  +  L+  SFVGMGDIVT E+F+W  ++P+ I+AS  + R M+D+  HKF+  R    S++ECY+ +YG T +EAY  F K V +AWKD+N+E L+PT +P  +L R LNL R  DV+Y+  DGYT   +  K  I SLLI PV +
Sbjct:  368 VEYAKNAMIRLAQSYLVEARWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAANDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDVNKEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPVAL 554          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: HUMS_ARATH (Alpha-humulene/(-)-(E)-beta-caryophyllene synthase OS=Arabidopsis thaliana GN=TPS21 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.620e-41
Identity = 78/184 (42.39%), Postives = 121/184 (65.76%), Query Frame = 1
Query:    7 YAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDTEELKDFIASLLINPVPI 558
            + K++++     Y  EAKW  ++Y+ T DEY   A++SS +  L  ++FV M D+   ++FEWL S+P+   AS  + R  +D+ S++FE  R HVA+ ++CY+ Q+G ++E A       VS+AWKD+N+E +RP + P PLLMR+LNL+R  DV Y+Y+D YT+ + LK+ I SLLI  +PI
Sbjct:  364 HLKKSLQKTANGYMQEAKWLKKDYIATFDEYKENAILSSGYYALIAMTFVRMTDVAKLDAFEWLSSHPKIRVASEIISRFTDDISSYEFEHKREHVATGIDCYMQQFGVSKERAVEVMGNIVSDAWKDLNQELMRPHVFPFPLLMRVLNLSRVIDVFYRYQDAYTNPKLLKEHIVSLLIETIPI 547          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: DCS1_GOSHI ((+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.620e-41
Identity = 83/187 (44.39%), Postives = 118/187 (63.10%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDT-EELKDFIASLLINPVPI 558
            + YAK AM    + Y  EA+W  QNY P+ +E+   AL +  +  L+  SFVGMGDIVT E+F+W  ++P+ I+AS  + R M+D+  HKF+  R    S++ECY+ +YG T +EAY  F K V +AWKD+N+  L+PT +P  +L R LNL R  DV+Y+  DGYT   +  K  I SLLI P+ +
Sbjct:  368 VEYAKNAMIRLAQSYLVEARWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAANDPKIIQASTIICRFMDDVTEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDVNQGFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: DCS4_GOSAR ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.475e-40
Identity = 82/187 (43.85%), Postives = 118/187 (63.10%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDT-EELKDFIASLLINPVPI 558
            + YAK AM    + Y  EA+W  QNY P+ +E+   AL +  +  L+  SFVGMGDIVT E+F+W  ++P+ I+AS  + R M+D+  HKF+  R    S++ECY+ +YG + +EAY  F K V +AWKD+N+E  +PT +P  +L R LNL R  DV+Y+  DGYT   +  K  I SLLI P+ +
Sbjct:  368 VEYAKNAMIRLAQSYLVEARWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAANDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVSAQEAYDVFNKHVESAWKDVNQEFQKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: ECS1_ARTAN (Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.245e-38
Identity = 75/186 (40.32%), Postives = 119/186 (63.98%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTL-VPVPLLMRILNLTRAADVVYKYKDGYTDT-EELKDFIASLLINPV 552
            ++Y KE +K  V+ Y  EA+W  + Y+PT++E+  V+ IS  +       F  MGD++  +SFEW+F+NP  + A C + R M+D+ SHK EQ R HVAS++ECY+ Q+ A+E++AY    K+V +AWK+IN E +     V + + MR+LN +R+ DV+YK KD +T    E+ + I SL ++ +
Sbjct:  360 VNYIKETLKEAVQSYMTEARWAKEEYIPTIEEHTKVSYISIGYKLALVAGFACMGDVIADDSFEWVFTNPPLVNACCLLCRTMDDLGSHKGEQDRKHVASTIECYMKQFDASEQQAYESLNKKVEDAWKEINREFMITCKDVNIHVAMRVLNFSRSVDVLYKNKDHFTHVGVEVINHIKSLFVDAI 545          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: 5EAS_TOBAC (Aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 7.838e-34
Identity = 74/186 (39.78%), Postives = 116/186 (62.37%), Query Frame = 1
Query:    7 YAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYK-DGYTDTEE-LKDFIASLLINPVPI 558
            +A E MK  V++Y  E+ W+ + Y P V EY++ AL ++ +  L+T S++GM    T++ FEWL  NP+ + AS  + R+++D  +++ E+SRG +A+ +EC +  YG + +EA ++F+     AWKDINE  LRPT V    L  ILNL R  +V Y +  DGYT  E+ LK  I +LL++ + I
Sbjct:  364 HAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: AMS1_ARTAN (Amorpha-4,11-diene synthase OS=Artemisia annua GN=AMS1 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.337e-33
Identity = 75/183 (40.98%), Postives = 110/183 (60.11%), Query Frame = 1
Query:   13 KEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDT-EELKDFIASLLINPVPI 558
            KE +K  V++   EAKW ++ ++PT +E+  V +I+     L+T  ++GM DI TKES EW  S P   R S  +GR +ND+++HK EQ R H +SS+E Y+ +Y   EE A +   K+V + WKDIN E L    +P PLLM ++ L +  +V Y  KD +T   +E K  I SLL+ P+ I
Sbjct:  364 KEFVKEFVRNLMVEAKWANEGHIPTTEEHDPVVIITGGANLLTTTCYLGMSDIFTKESVEWAVSAPPLFRYSGILGRRLNDLMTHKAEQERKHSSSSLESYMKEYNVNEEYAQTLIYKEVEDVWKDINREYLTTKNIPRPLLMAVIYLCQFLEVQYAGKDNFTRMGDEYKHLIKSLLVYPMSI 546          
The following BLAST results are available for this feature:
BLAST of CX288992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DCS3_GOSAR6.182e-4747.59(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]
CASS_RICCO1.091e-4344.02Casbene synthase, chloroplastic OS=Ricinus communi... [more]
DCS1_GOSAR2.688e-4245.99(+)-delta-cadinene synthase isozyme XC1 OS=Gossypi... [more]
DCS2_GOSAR1.021e-4145.45(+)-delta-cadinene synthase isozyme XC14 OS=Gossyp... [more]
HUMS_ARATH6.620e-4142.39Alpha-humulene/(-)-(E)-beta-caryophyllene synthase... [more]
DCS1_GOSHI6.620e-4144.39(+)-delta-cadinene synthase OS=Gossypium hirsutum ... [more]
DCS4_GOSAR1.475e-4043.85(+)-delta-cadinene synthase isozyme C2 OS=Gossypiu... [more]
ECS1_ARTAN5.245e-3840.32Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=... [more]
5EAS_TOBAC7.838e-3439.78Aristolochene synthase OS=Nicotiana tabacum GN=EAS... [more]
AMS1_ARTAN1.337e-3340.98Amorpha-4,11-diene synthase OS=Artemisia annua GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02007G07SK IF1 Citrus clementina cDNA clone C02007G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288992 ID=CX288992; Name=CX288992; organism=Citrus clementina; type=EST; length=640bp
CTCCATTATGCGAAAGAAGCGATGAAGAATCAAGTTAAGCATTACTTCTT
TGAAGCTAAATGGTATCATCAGAATTATGTTCCGACGGTGGATGAGTACA
TGACGGTTGCATTAATTAGCTCTGCCCACCCAAATTTGTCAACCATATCT
TTTGTTGGCATGGGAGACATTGTAACTAAAGAATCTTTTGAATGGTTATT
CAGCAATCCTAGATCGATTAGGGCTTCTTGTGCAGTTGGCAGACTAATGA
ATGACATGGTGTCACACAAGTTTGAACAAAGCAGAGGGCACGTTGCCTCA
AGCGTTGAGTGTTACATCAACCAATATGGAGCAACAGAAGAGGAAGCATA
CAGTGAGTTCCGGAAACAAGTTTCAAATGCATGGAAGGATATAAATGAGG
AATGCCTGCGCCCAACTCTTGTGCCAGTGCCACTTCTTATGCGAATTCTC
AATCTTACACGAGCTGCAGATGTCGTTTACAAGTATAAAGATGGCTACAC
TGACACCGAAGAGCTGAAAGATTTTATTGCTTCTCTGCTTATTAATCCTG
TGCCCATATGAGCATGATATTAACCTTATGTTTCAACACCCTGCTGGAAA
ATAATTAGTCCATTGCCGTTTCAGCTTGGATGCTTTTTAA
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