CX288993

Overview
NameCX288993
Unique NameCX288993
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288993 vs. ExPASy Swiss-Prot
Match: K6PF5_ARATH (6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = -2
Query:  131 CRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIE 271
            CRKR++KVAVVGVPKTIDNDIL MDKTFGFDTAVEEAQRAINSAYIE
Sbjct:  292 CRKRKIKVAVVGVPKTIDNDILHMDKTFGFDTAVEEAQRAINSAYIE 338          
BLAST of CX288993 vs. ExPASy Swiss-Prot
Match: K6PF7_ARATH (6-phosphofructokinase 7 OS=Arabidopsis thaliana GN=PFK7 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14
Identity = 36/48 (75.00%), Postives = 46/48 (95.83%), Query Frame = -2
Query:  125 RKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEVQ 268
            R+RR+KVAVVG+PKTIDNDI ++DK+FGFDTAVEEAQRAIN+A++E +
Sbjct:  204 RRRRLKVAVVGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAE 251          
BLAST of CX288993 vs. ExPASy Swiss-Prot
Match: K6PF3_ARATH (6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 34/48 (70.83%), Postives = 45/48 (93.75%), Query Frame = -2
Query:  125 RKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEVQ 268
            R+R +KVAV+G+PKTIDNDI ++DK+FGFDTAVEEAQRAIN+A++E +
Sbjct:  204 RRRGLKVAVIGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAE 251          
BLAST of CX288993 vs. ExPASy Swiss-Prot
Match: K6PF1_ARATH (6-phosphofructokinase 1 OS=Arabidopsis thaliana GN=PFK1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 34/46 (73.91%), Postives = 44/46 (95.65%), Query Frame = -2
Query:  131 RKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIE 268
            RKR++KVAV G+PKTIDNDI ++D++FGFDTAVEEAQRAIN+A++E
Sbjct:  205 RKRKLKVAVAGIPKTIDNDIPIIDRSFGFDTAVEEAQRAINAAHVE 250          
BLAST of CX288993 vs. ExPASy Swiss-Prot
Match: K6PF6_ARATH (6-phosphofructokinase 6 OS=Arabidopsis thaliana GN=PFK6 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 34/46 (73.91%), Postives = 43/46 (93.48%), Query Frame = -2
Query:  131 RKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIE 268
            R+R +KVAV G+PKTIDNDI ++DK+FGFDTAVEEAQRAIN+A++E
Sbjct:  205 RRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 250          
BLAST of CX288993 vs. ExPASy Swiss-Prot
Match: K6PF4_ARATH (6-phosphofructokinase 4, chloroplastic OS=Arabidopsis thaliana GN=PFK4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 33/47 (70.21%), Postives = 44/47 (93.62%), Query Frame = -2
Query:  125 KRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEVQ 265
            +R ++VAV G+PKTIDNDI ++DK+FGFDTAVEEAQRAIN+A++EV+
Sbjct:  256 RRGLQVAVSGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 302          
The following BLAST results are available for this feature:
BLAST of CX288993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
K6PF5_ARATH1.105e-1793.626-phosphofructokinase 5, chloroplastic OS=Arabidop... [more]
K6PF7_ARATH1.494e-1475.006-phosphofructokinase 7 OS=Arabidopsis thaliana GN... [more]
K6PF3_ARATH1.265e-1370.836-phosphofructokinase 3 OS=Arabidopsis thaliana GN... [more]
K6PF1_ARATH1.265e-1373.916-phosphofructokinase 1 OS=Arabidopsis thaliana GN... [more]
K6PF6_ARATH4.806e-1373.916-phosphofructokinase 6 OS=Arabidopsis thaliana GN... [more]
K6PF4_ARATH1.071e-1270.216-phosphofructokinase 4, chloroplastic OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionC02007G08SK IF1 Citrus clementina cDNA clone C02007G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288993 ID=CX288993; Name=CX288993; organism=Citrus clementina; type=EST; length=668bp
GAATTCGGCACGAGGCAAGTTTTTATACTAGGAAACAGATTAATCACACA
AATCTTAGACAAAAATGAAAAACAATAAATGAGCATAATATGCTTACTGA
CAGCTATATGAATAGCATTTTAATTTGTACCTCAATGTAAGCAGAATTTA
TTGCTCGCTGTGCTTCTTCAACTGCAGTGTCAAAGCCGAAAGTTTTATCC
ATCAGCAAAATATCATTGTCGATGGTTTTTGGCACACCAACTACAGCCAC
CTTCATCCTTCTTTTACGACACTATAGGAAAAATTTGAAGACTATGAACA
TATATTTTGAAAGAAGAGCATCAAAACAAGCATGCATCAGTCATGGAGGC
AATTTTAGAAAGTTGTCACTTGTGGAGATCCAGCATGAACCCTCTAACTG
TCTAACTTGACCTATTATATAGCAGTATTTGAATATCCAATTTCACATCA
ATATGTAAAATACAACACAATAAAAGGAATAACATGTAAATATCATCTAC
CCTGGAATCCACGACCTCCCCAAGTCCTATAGGAGACAAAAACTTTAAAC
ACGACATCAGGCAAATTGAGAATAAATGAAAGGACAATTATTTACTAAAG
TTCATAAATACTCTAGTCATCAGATTAAAATCAACAAAAAATTGCATTAT
TAATCATAAGATATATTA
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