CX289002

Overview
NameCX289002
Unique NameCX289002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length455
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig169 contig Ccv1_Contig169:1..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: YEIA_ECOLI (Uncharacterized protein yeiA OS=Escherichia coli (strain K12) GN=yeiA PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 3.833e-28
Identity = 70/150 (46.67%), Postives = 94/150 (62.67%), Query Frame = 3
Query:    6 NFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANT 455
            NFSCP  M    MG+ VGQ   L+E++C  +   +T+P+ AKMTPNI D+ E A  A   G++G++AINT+ S+  IDL      P V G S+  GYS KAV PIA    L   + M++    +D+ +SGIGG+ET  DAAEF+LLGA T
Sbjct:  134 NFSCPQ-MTSHAMGSDVGQSPELVEKYCRAVKRGSTLPMLAKMTPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIVNGKSSISGYSGKAVKPIA----LRFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAAT 278          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: DPYD_MOUSE (Dihydropyrimidine dehydrogenase [NADP+] OS=Mus musculus GN=Dpyd PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.843e-22
Identity = 58/151 (38.41%), Postives = 84/151 (55.63%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLK-TLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCPHGM ER MG A GQD  L+   C W+     VP +AK+TPN+TDI   AR A   G++GV+A NT+  +MG+    T  P   +   +T GG S  A+ PIAL  V +IA+ +        + +   GG+++     +F+  GA+
Sbjct:  667 LNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVRVPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGIGRRTTYGGVSGTAIRPIALRAVTAIARALPG------FPILATGGIDSAESGLQFLHSGAS 811          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: DPYD_HUMAN (Dihydropyrimidine dehydrogenase [NADP+] OS=Homo sapiens GN=DPYD PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.843e-22
Identity = 58/151 (38.41%), Postives = 83/151 (54.97%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLK-TLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCPHGM ER MG A GQD  L+   C W+     +P +AK+TPN+TDI   AR A   G+ GV+A NT+  +MG+    T  P   +   +T GG S  A+ PIAL  V SIA+ +        + +   GG+++     +F+  GA+
Sbjct:  667 LNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGANGVTATNTVSGLMGLKSDGTPWPAVGIAKRTTYGGVSGTAIRPIALRAVTSIARALPG------FPILATGGIDSAESGLQFLHSGAS 811          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: DPYD_DICDI (Dihydropyrimidine dehydrogenase [NADP+] OS=Dictyostelium discoideum GN=pyd1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.843e-22
Identity = 60/151 (39.74%), Postives = 84/151 (55.63%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGI-DLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCPHGM E+ MG A GQD  L+   C W+ A   +P +AK+TPN+T+I E A+ A   G++GV+AINT+  +MG+       P    E  +T GG S  A  PIAL  V SI K +       DY +   GG ++     +F+  GA+
Sbjct:  665 LNLSCPHGMGEKGMGLACGQDTELVFHICQWVRAATRLPFFAKLTPNVTEIKEIAKAAHDGGADGVTAINTVSGLMGLKGDSNAWPAIGDEKRTTYGGVSGNATRPIALRAVSSIRKSL------PDYPIMATGGADSADATIQFLHCGAS 809          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: DPYD_BOVIN (Dihydropyrimidine dehydrogenase [NADP+] OS=Bos taurus GN=DPYD PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.843e-22
Identity = 59/152 (38.82%), Postives = 85/152 (55.92%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCV--EGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCPHGM ER MG A GQD  L+   C W+     +P +AK+TPN+TDI   AR A   G+ GV+A NT+  +MG+      P P V  E  +T GG S  A+ PIAL  V +IA+ +       ++ +   GG+++     +F+  GA+
Sbjct:  667 LNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVRIPFFAKLTPNVTDIVSIARAAKEGGANGVTATNTVSGLMGLKADG-TPWPAVGREKRTTYGGVSGTAIRPIALRAVTTIARAL------PEFPILATGGIDSAESGLQFLHGGAS 811          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: DPYD_PIG (Dihydropyrimidine dehydrogenase [NADP+] OS=Sus scrofa GN=DPYD PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.105e-22
Identity = 58/152 (38.16%), Postives = 84/152 (55.26%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEG--YSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCPHGM ER MG A GQD  L+   C W+     +P +AK+TPN+TDI   AR A   G++GV+A NT+  +MG+      P P V     +T GG S  A+ PIAL  V +IA+ +        + +   GG+++     +F+  GA+
Sbjct:  667 LNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADG-TPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPG------FPILATGGIDSAESGLQFLHSGAS 811          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: DPYD_PONAB (Dihydropyrimidine dehydrogenase [NADP+] OS=Pongo abelii GN=DPYD PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.002e-22
Identity = 57/151 (37.75%), Postives = 82/151 (54.30%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLK-TLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCPHGM ER MG A GQD  L+   C W+     +P +AK+TPN+TDI   AR A   G+ GV+A NT+  +MG+    T  P   +   +T GG S  A+ PIAL  V S A+ +        + +   GG+++     +F+  GA+
Sbjct:  667 LNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGANGVTATNTVSGLMGLKSDGTPWPAVGIAKRTTYGGVSGTAIRPIALRAVTSTARALPG------FPILATGGIDSAESGLQFLHSGAS 811          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: DPYD_RAT (Dihydropyrimidine dehydrogenase [NADP+] OS=Rattus norvegicus GN=Dpyd PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.145e-22
Identity = 58/152 (38.16%), Postives = 83/152 (54.61%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEG--YSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCPHGM ER MG A GQD  L+   C W+     VP +AK+TPN+TDI   AR A   G++GV+A NT+  +MG+      P P V     +T GG S   + PIAL  V +IA+ +        + +   GG+++     +F+  GA+
Sbjct:  667 LNLSCPHGMGERGMGLACGQDPELVRNICRWVRQSVRVPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADG-SPWPSVGSGKRTTYGGVSGTTIRPIALRAVTAIARALPG------FPILATGGIDSAESGLQFLHSGAS 811          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: DPYD_DANRE (Dihydropyrimidine dehydrogenase [NADP+] OS=Danio rerio GN=dpyd PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.321e-20
Identity = 54/152 (35.53%), Postives = 84/152 (55.26%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCV--EGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCPHGM ER MG A GQD  L+   C W+    ++P +AK+TPN+T+I + A  A   G++GV+A NT+  +M +      P P +     +T GG S  A+ PIAL  V +IA+ +        + +   GG+++     +F+  GA+
Sbjct:  667 LNLSCPHGMGERGMGLACGQDPELVRNICRWVRKATSIPFFAKLTPNVTNIVDIATAAYEGGADGVTATNTVSGLMALKADA-TPWPGIGRGARTTYGGVSGNAIRPIALRAVSAIARALPG------FPILATGGIDSAESGLQFLHAGAS 811          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: DPYD_CAEEL (Dihydropyrimidine dehydrogenase [NADP+] OS=Caenorhabditis elegans GN=dpyd-1 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.321e-20
Identity = 56/151 (37.09%), Postives = 82/151 (54.30%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLK-TLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCPHGM E+ MG A GQ   ++++ C W+ A   +P + KMTPNITD+ E AR A   G+ GV+A NT+ S+M +       P       +T GG S  A+ PIA+  V SIA  +        + +   GG+E+      F++ GA+
Sbjct:  681 LNLSCPHGMGEKGMGLACGQSPEIVKEICRWVRACVKIPFFPKMTPNITDVREIARAARDGGASGVTATNTVSSLMHMKADGNAWPAIGSTKRTTYGGMSGSAIRPIAMKAVSSIANELDG------FPIMATGGIESAETGLGFLMAGAS 825          
The following BLAST results are available for this feature:
BLAST of CX289002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
YEIA_ECOLI3.833e-2846.67Uncharacterized protein yeiA OS=Escherichia coli (... [more]
DPYD_MOUSE1.843e-2238.41Dihydropyrimidine dehydrogenase [NADP+] OS=Mus mus... [more]
DPYD_HUMAN1.843e-2238.41Dihydropyrimidine dehydrogenase [NADP+] OS=Homo sa... [more]
DPYD_DICDI1.843e-2239.74Dihydropyrimidine dehydrogenase [NADP+] OS=Dictyos... [more]
DPYD_BOVIN1.843e-2238.82Dihydropyrimidine dehydrogenase [NADP+] OS=Bos tau... [more]
DPYD_PIG4.105e-2238.16Dihydropyrimidine dehydrogenase [NADP+] OS=Sus scr... [more]
DPYD_PONAB7.002e-2237.75Dihydropyrimidine dehydrogenase [NADP+] OS=Pongo a... [more]
DPYD_RAT9.145e-2238.16Dihydropyrimidine dehydrogenase [NADP+] OS=Rattus ... [more]
DPYD_DANRE1.321e-2035.53Dihydropyrimidine dehydrogenase [NADP+] OS=Danio r... [more]
DPYD_CAEEL1.321e-2037.09Dihydropyrimidine dehydrogenase [NADP+] OS=Caenorh... [more]

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Properties
Property NameValue
Genbank descriptionC02007H05SK IF1 Citrus clementina cDNA clone C02007H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289002 ID=CX289002; Name=CX289002; organism=Citrus clementina; type=EST; length=455bp
AAGTTAATTTTTCATGTCCACATGGCATGCCGGAACGTAAAATGGGGGCT
GCTGTTGGCCAAGATTGTACGCTGTTGGAACAATTTTGTGGTTGGATAAA
TGCAAAAGCTACTGTTCCTGTGTGGGCAAAGATGACTCCTAACATTACTG
ACATTACAGAACCAGCTAGGGTGGCTCTCATATCAGGAAGTGAGGGAGTA
TCTGCTATTAACACAATCATGAGCGTCATGGGAATTGATCTGAAAACTTT
GCGTCCTGAACCTTGTGTGGAGGGATACTCTACACCTGGGGGCTATTCTT
GCAAGGCAGTCCATCCTATTGCATTATGAAAAGTATTGAGTATAGCCAAA
ATGATGAAGTCGGAATTCAATGACAAGGATTACTCACTTTCTGGCATTGG
AGGTGTAGAAACTGGTGGCGATGCTGCCGAATTTATTCTTCTTGGTGCAA
ATACT
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