CX289004

Overview
NameCX289004
Unique NameCX289004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10128 contig Ccv1_Contig10128:247..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289004 vs. ExPASy Swiss-Prot
Match: TBCA_ARATH (Tubulin-specific chaperone A OS=Arabidopsis thaliana GN=At2g30410 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 8.440e-15
Identity = 45/81 (55.56%), Postives = 49/81 (60.49%), Query Frame = -3 
Query:  222 AKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKR-XXXXXXXXXXXXXXXXXXXXXXXXXEDARSTIADVEKLFQTTEA 461
            AKTADMK+KGADPYDLKQQENVL ESRMMIPDC KR                          EDA+ T+ADVEK F T +A
Sbjct:   33 AKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTEDA 113
The following BLAST results are available for this feature:
BLAST of CX289004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TBCA_ARATH8.440e-1555.56Tubulin-specific chaperone A OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC02007H08SK IF1 Citrus clementina cDNA clone C02007H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289004 ID=CX289004; Name=CX289004; organism=Citrus clementina; type=EST; length=463bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATCAGCAAACGTCGACT
GCCATTCCAAACCATTGTAGCAGTTAATGTCAAGGAGCCAAATAAAAATG
ATATCTCCGAAAATAATTCAAGTTCATGTCCTCAAATTGTGACAGGGTTC
ATAAAGCAATAAAAATAAGCATATCTCTCAAGCACTTTACATTACAACCA
TTGATAAAAGCCAGGATACTAAGCCTCAGTTGTTTGAAACAACTTTTCGA
CATCTGCAATAGTGCTTCGAGCATCCTCAATCTCCTGGCCTTCTTGGTTT
TCCTCCTCCAACTCAGTCAGAGTTGCTTTTAGCTCAGCTAATGCAGACTC
TAGGCGCTTCCGGCAATCAGGAATCATCATTCTTGACTCGGCTAGCACAT
TTTCCTGTTGCTTGAGGTCATAAGGGTCAGCTCCTTTCTCCTTCATATCA
GCAGTTTTAGCAG
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