CX289006

Overview
NameCX289006
Unique NameCX289006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DRP3A_ARATH (Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2)

HSP 1 Score: 377.096 bits (967), Expect = 4.254e-104
Identity = 187/214 (87.38%), Postives = 205/214 (95.79%), Query Frame = 1
Query:    1 VPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            VPQLAKKLNQILVQHIK +LP LKSRIS+ALV+ AKEH SYGE+TES+AGQGALLLN LSKY EA+SS++EGK+EEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGP+SALFVPDVPFEVL+RRQI+RLLDPSLQCARFI++ELIKISH C++NELQRFPVLRKRMDEVIG+FLREGLEPSE MIG II+MEMDYIN
Sbjct:  310 VPQLAKKLNQILVQHIKVLLPDLKSRISNALVATAKEHQSYGELTESRAGQGALLLNFLSKYCEAYSSLLEGKSEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPRSALFVPDVPFEVLVRRQISRLLDPSLQCARFIFEELIKISHRCMMNELQRFPVLRKRMDEVIGDFLREGLEPSEAMIGDIIDMEMDYIN 523          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DRP3B_ARATH (Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B PE=1 SV=2)

HSP 1 Score: 352.443 bits (903), Expect = 1.122e-96
Identity = 173/214 (80.84%), Postives = 199/214 (92.99%), Query Frame = 1
Query:    1 VPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            VPQLAKKLNQ+LVQHIKA+LP LKSRI++AL + AKE+ SYG+ITES+ GQGALLL+ ++KY EA+SS +EGK++EMSTSELSGGARI YIFQS+FVKSLEEVDPCEDLT DDIRTAIQNATGP+SALFVPDVPFEVL+RRQI+RLLDPSLQCARFI+DEL+KISH C++ ELQRFPVL+KRMDEVIGNFLREGLEPS+ MI  +IEMEMDYIN
Sbjct:  295 VPQLAKKLNQVLVQHIKALLPSLKSRINNALFATAKEYESYGDITESRGGQGALLLSFITKYCEAYSSTLEGKSKEMSTSELSGGARILYIFQSVFVKSLEEVDPCEDLTADDIRTAIQNATGPRSALFVPDVPFEVLVRRQISRLLDPSLQCARFIFDELVKISHQCMMKELQRFPVLQKRMDEVIGNFLREGLEPSQAMIRDLIEMEMDYIN 508          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYNA_DICDI (Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.372e-46
Identity = 91/212 (42.92%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   10 LAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGE-ITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            L+K LN++L+ HI+  LP LK ++S  L  V  E ++YG+ + ++K  QGALLL I++ +S  F   ++GK  ++S +EL GGARI YIF  I+   +  +DP E ++ +DIRT ++NATGP++ALF+P++ FE+L+++Q+ RL +PS QC  ++YDEL +I       EL RF  L+ R+ EV+ N L++   P++TMI H+I++E  +IN
Sbjct:  279 LSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELSTYGDPLYDTKNSQGALLLQIITIFSSNFKDAIDGKLTDLSNNELYGGARISYIFNEIYSHCVNNIDPLEGISLNDIRTTMRNATGPRAALFIPEISFELLVKKQVVRLEEPSAQCVEYVYDELQRIVSQLEAKELSRFINLKARVIEVVNNLLQKHKVPTKTMIEHLIKIETAFIN 490          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DNM1_YEAST (Dynamin-related protein DNM1 OS=Saccharomyces cerevisiae GN=DNM1 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.220e-44
Identity = 85/212 (40.09%), Postives = 143/212 (67.45%), Query Frame = 1
Query:   10 LAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEI-TESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            LAK LNQ L+ HI+  LP +K+++++ +    +E A YG +   +   + +L+L +++K+S  F S ++G + +++T EL GGARI+YI+ ++F  SL+ +DP  +L+  D+RTAI+N+TGP+  LFVP++ F++L++ QI  LL+PS +C   +Y+EL+KI H C   EL R+P L+  + EVI   LRE L+P+ + +  +I++   YIN
Sbjct:  316 LAKLLNQTLLSHIRDKLPDIKTKLNTLISQTEQELARYGGVGATTNESRASLVLQLMNKFSTNFISSIDGTSSDINTKELCGGARIYYIYNNVFGNSLKSIDPTSNLSVLDVRTAIRNSTGPRPTLFVPELAFDLLVKPQIKLLLEPSQRCVELVYEELMKICHKCGSAELARYPKLKSMLIEVISELLRERLQPTRSYVESLIDIHRAYIN 527          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: VPS1_SCHPO (Vacuolar protein sorting-associated protein 1 OS=Schizosaccharomyces pombe GN=vps1 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.298e-41
Identity = 82/214 (38.32%), Postives = 140/214 (65.42%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNEL-QRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P LA+KLN IL+ HI+  LP +K RI++AL     E  S G+         +++LN+++ +   + ++V+G++EE+S +ELSGGARI ++F  IF   ++ +DP +++ D DIRT + N++GP  +LF+    FEV++++QI RL DPSL+C   IYDEL++I +  L   + +R+P+L+    +V+  F R+ ++P+ T++  ++ ME  YIN
Sbjct:  292 PFLARKLNMILMHHIRNTLPEIKVRINAALAKYQAELHSLGDTPVGD--NSSIVLNLITDFCNEYRTVVDGRSEELSATELSGGARIAFVFHEIFSNGIQAIDPFDEVKDSDIRTILYNSSGPSPSLFMGTAAFEVIVKQQIKRLEDPSLKCVSLIYDELVRILNQLLQRPIFKRYPLLKDEFYKVVIGFFRKCMQPTNTLVMDMVAMEGSYIN 503          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DNM1L_DANRE (Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.001e-41
Identity = 89/214 (41.59%), Postives = 137/214 (64.02%), Query Frame = 1
Query:   10 LAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHC---LVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            LA+ LN++L+ HI+  LP LK+RI+          +SYGE  E  +   A LL +++K++  + + +EG  + + T+EL GGARI YIF   F ++LE VDP   LT  D+ TAI+NATGP+ ALFVP+V FE+L++RQ+ RL +PSL+C   +++E+ +I  HC      EL RFP L   + EV+ + LR+ L  +  M+ +++ +E+ YIN
Sbjct:  284 LARTLNRLLMHHIRDCLPELKTRINVLSAQYQSLLSSYGEPVEDMS---ATLLQLITKFATEYCNTIEGTAKYIETAELCGGARICYIFHETFGRTLESVDPLGGLTTIDVLTAIRNATGPRPALFVPEVSFELLVKRQVKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTSLLRKRLPVTNEMVHNLVAIELAYIN 494          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DNM1L_RAT (Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm1l PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.686e-41
Identity = 91/214 (42.52%), Postives = 135/214 (63.08%), Query Frame = 1
Query:   10 LAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHC---LVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            LA+ LN++L+ HI+  LP LK+RI+           SYGE  + K+   A LL +++K++  + + +EG  + + TSEL GGARI YIF   F ++LE VDP   L   DI TAI+NATGP+ ALFVP+V FE+L++RQI RL +PSL+C   +++E+ +I  HC      EL RFP L   + EV+   LR+ L  +  M+ +++ +E+ YIN
Sbjct:  298 LARTLNRLLMHHIRDCLPELKTRINVLAAQYQSLLNSYGEPVDDKS---ATLLQLITKFATEYCNTIEGTAKYIETSELCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYIN 508          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DNM1L_MOUSE (Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.686e-41
Identity = 91/214 (42.52%), Postives = 135/214 (63.08%), Query Frame = 1
Query:   10 LAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHC---LVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            LA+ LN++L+ HI+  LP LK+RI+           SYGE  + K+   A LL +++K++  + + +EG  + + TSEL GGARI YIF   F ++LE VDP   L   DI TAI+NATGP+ ALFVP+V FE+L++RQI RL +PSL+C   +++E+ +I  HC      EL RFP L   + EV+   LR+ L  +  M+ +++ +E+ YIN
Sbjct:  291 LARTLNRLLMHHIRDCLPELKTRINVLAAQYQSLLNSYGEPVDDKS---ATLLQLITKFATEYCNTIEGTAKYIETSELCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYIN 501          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DNM1L_HUMAN (Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.686e-41
Identity = 91/214 (42.52%), Postives = 135/214 (63.08%), Query Frame = 1
Query:   10 LAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHC---LVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            LA+ LN++L+ HI+  LP LK+RI+           SYGE  + K+   A LL +++K++  + + +EG  + + TSEL GGARI YIF   F ++LE VDP   L   DI TAI+NATGP+ ALFVP+V FE+L++RQI RL +PSL+C   +++E+ +I  HC      EL RFP L   + EV+   LR+ L  +  M+ +++ +E+ YIN
Sbjct:  285 LARTLNRLLMHHIRDCLPELKTRINVLAAQYQSLLNSYGEPVDDKS---ATLLQLITKFATEYCNTIEGTAKYIETSELCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYIN 495          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DNM1L_BOVIN (Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.686e-41
Identity = 91/214 (42.52%), Postives = 135/214 (63.08%), Query Frame = 1
Query:   10 LAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHC---LVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            LA+ LN++L+ HI+  LP LK+RI+           SYGE  + K+   A LL +++K++  + + +EG  + + TSEL GGARI YIF   F ++LE VDP   L   DI TAI+NATGP+ ALFVP+V FE+L++RQI RL +PSL+C   +++E+ +I  HC      EL RFP L   + EV+   LR+ L  +  M+ +++ +E+ YIN
Sbjct:  298 LARTLNRLLMHHIRDCLPELKTRINVLAAQYQSLLNSYGEPVDDKS---ATLLQLITKFATEYCNTIEGTAKYIETSELCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYIN 508          
The following BLAST results are available for this feature:
BLAST of CX289006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DRP3A_ARATH4.254e-10487.38Dynamin-related protein 3A OS=Arabidopsis thaliana... [more]
DRP3B_ARATH1.122e-9680.84Dynamin-related protein 3B OS=Arabidopsis thaliana... [more]
DYNA_DICDI2.372e-4642.92Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1... [more]
DNM1_YEAST2.220e-4440.09Dynamin-related protein DNM1 OS=Saccharomyces cere... [more]
VPS1_SCHPO2.298e-4138.32Vacuolar protein sorting-associated protein 1 OS=S... [more]
DNM1L_DANRE3.001e-4141.59Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=... [more]
DNM1L_RAT6.686e-4142.52Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm... [more]
DNM1L_MOUSE6.686e-4142.52Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE... [more]
DNM1L_HUMAN6.686e-4142.52Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE... [more]
DNM1L_BOVIN6.686e-4142.52Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC02007H10SK IF1 Citrus clementina cDNA clone C02007H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289006 ID=CX289006; Name=CX289006; organism=Citrus clementina; type=EST; length=643bp
GTTCCTCAGTTGGCAAAGAAGTTGAACCAGATTCTTGTACAACATATCAA
GGCTATACTTCCTGGGTTGAAGTCACGCATTAGCTCTGCATTAGTTTCTG
TTGCAAAGGAGCATGCAAGCTACGGGGAAATCACAGAATCAAAGGCTGGT
CAGGGAGCTCTACTCCTGAATATTCTTTCTAAATACTCCGAAGCATTTTC
TTCAATGGTGGAGGGAAAGAATGAAGAAATGTCAACATCTGAGCTTTCTG
GCGGGGCACGAATTCACTATATTTTTCAGTCAATCTTTGTGAAGAGCTTA
GAGGAGGTTGATCCCTGTGAGGACTTGACTGACGATGACATTCGAACTGC
TATTCAGAATGCAACTGGTCCCAAATCTGCACTATTTGTACCAGACGTGC
CGTTCGAAGTTCTTATTCGAAGGCAAATTGCTCGCTTGTTGGATCCTAGT
CTTCAGTGTGCGAGGTTCATATATGATGAGTTAATAAAGATTAGCCATCA
CTGTCTTGTGAATGAACTGCAGCGCTTTCCTGTTCTTAGAAAGCGTATGG
ATGAGGTCATCGGGAACTTTCTGCGAGAAGGCCTTGAGCCCTCCGAGACA
ATGATTGGACATATCATTGAAATGGAGATGGACTATATAAACA
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