CX289017

Overview
NameCX289017
Unique NameCX289017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length285
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289017 vs. ExPASy Swiss-Prot
Match: PPR26_ARATH (Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.432e-23
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 2
Query:   11 EIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESALHIRKRND 241
            E YQ ML K L+PD+++YNTL NG CK GD+  AR IVD M   GL PDKITYTTL+DGFC+ GD+E+AL IRK  D
Sbjct:  366 ESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMD 442          
BLAST of CX289017 vs. ExPASy Swiss-Prot
Match: PP442_ARATH (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 30/74 (40.54%), Postives = 52/74 (70.27%), Query Frame = 2
Query:    5 AMEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESALHI 226
            A  I+  M+ + L P++I+YN L  G C+ G++++A++++DEM   GL+P+ +TY T++DG+CK GDL  A  +
Sbjct:  646 ASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRL 719          

HSP 2 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 2
Query:    5 AMEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESA 217
            A EI++ M  K + PD+  Y  L NG  K+G+M++A  I DEM   GL P+ I Y  LL GFC+ G++E A
Sbjct:  611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681          

HSP 3 Score: 67.3958 bits (163), Expect = 2.545e-11
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 2
Query:    5 AMEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESALHI 226
            A E+   M  K L P+ + Y T+ +G CK GD+ EA ++ DEM   GL PD   YTTL+DG C+  D+E A+ I
Sbjct:  681 AKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 754          
BLAST of CX289017 vs. ExPASy Swiss-Prot
Match: PPR12_ARATH (Pentatricopeptide repeat-containing protein At1g05665, mitochondrial OS=Arabidopsis thaliana GN=At1g05665 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.220e-13
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 2
Query:    5 AMEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESALHIRK 232
            A E+   M +  L+P++  YN++ NGLCK G+++EA K+V E    GLN D +TYTTL+D +CK G+++ A  I K
Sbjct:  475 ANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILK 550          

HSP 2 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2
Query:    5 AMEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESA 217
            A +++  M  K L+PD + +  L NG CK G MK+A ++ + M   G +P+ +TYTTL+DG CKEGDL+SA
Sbjct:  405 AGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSA 475          

HSP 3 Score: 70.8626 bits (172), Expect = 2.302e-12
Identity = 28/74 (37.84%), Postives = 47/74 (63.51%), Query Frame = 2
Query:    5 AMEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESALHI 226
            A + +  M  +D+ PD++ Y  + +G C++GDM EA K+  EM   GL PD +T+T L++G+CK G ++ A  +
Sbjct:  370 ASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 443          

HSP 4 Score: 67.3958 bits (163), Expect = 2.545e-11
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 2
Query:    5 AMEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESA 217
            A E +  M+R+ + PD ++Y TL +G CK GD++ A K   EM +  + PD +TYT ++ GFC+ GD+  A
Sbjct:  335 AEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 405          

HSP 5 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 2
Query:   11 EIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESA 217
            ++ ++M RK LKP+  +Y ++   LC++  + EA +   EM   G+ PD + YTTL+DGFCK GD+ +A
Sbjct:  302 KLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAA 370          
BLAST of CX289017 vs. ExPASy Swiss-Prot
Match: RF1_ORYSI (Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 33/74 (44.59%), Postives = 52/74 (70.27%), Query Frame = 2
Query:   11 EIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESALHIRK 232
            ++++LM+R  +KP++I YNTL NG C  G M EA K++  M + GL P+ +TY+TL++G+CK   +E AL + K
Sbjct:  497 KLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFK 570          
BLAST of CX289017 vs. ExPASy Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13
Identity = 30/76 (39.47%), Postives = 52/76 (68.42%), Query Frame = 2
Query:    5 AMEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESALHIRK 232
            A+EI  +ML++   PD+  YN++ +GLCK+G++KEA +++D+M T   +P+ +TY TL+   CKE  +E A  + +
Sbjct:  314 AIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELAR 389          
BLAST of CX289017 vs. ExPASy Swiss-Prot
Match: PPR93_ARATH (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.762e-12
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 2
Query:    5 AMEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCK 196
            AM++Y+ M R+ + PD+  YN+L NGLC  G + EA++++D M T G  PD +TY TL++GFCK
Sbjct:  263 AMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCK 326          
BLAST of CX289017 vs. ExPASy Swiss-Prot
Match: PPR27_ARATH (Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.762e-12
Identity = 32/72 (44.44%), Postives = 51/72 (70.83%), Query Frame = 2
Query:    5 AMEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESAL 220
            +M++++ ML +D+KP++I YN+L NGLC  G + EA  + D+M + G+ P+ ITY  L++GFCK   L+ AL
Sbjct:  315 SMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEAL 386          

HSP 2 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 24/63 (38.10%), Postives = 45/63 (71.43%), Query Frame = 2
Query:   14 IYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEG 202
            +Y+ M+R+ ++P++  +N + N LCK G M +AR ++++M   G +P+ ++Y TL+DG+CK G
Sbjct:  210 VYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLG 272          
BLAST of CX289017 vs. ExPASy Swiss-Prot
Match: PP306_ARATH (Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.762e-12
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 2
Query:    5 AMEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESALHI 226
            A +++  M  + +  +++ YNTL  GLC+   + EA K+VD+M ++G+NP+ ITY TL+DGFC  G L  AL +
Sbjct:  287 AFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSL 360          
BLAST of CX289017 vs. ExPASy Swiss-Prot
Match: PP407_ARATH (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.127e-12
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 2
Query:    5 AMEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESALHI 226
            A+ + + M+ K +KPD I Y++L  G C+    KEA  + +EM   GL PD+ TYT L++ +C EGDLE AL +
Sbjct:  469 ALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542          

HSP 2 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   11 EIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESAL 220
            ++ + M  K L+P+LI YN + NGLC+ G MKE   ++ EM   G + D++TY TL+ G+CKEG+   AL
Sbjct:  261 KLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQAL 330          

HSP 3 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:    5 AMEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESALHI-RKRND 241
            A+ ++  MLR  L P +I Y +L + +CK G+M  A + +D+M   GL P++ TYTTL+DGF ++G +  A  + R+ ND
Sbjct:  329 ALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMND 408          

HSP 4 Score: 63.929 bits (154), Expect = 7.438e-11
Identity = 26/76 (34.21%), Postives = 47/76 (61.84%), Query Frame = 2
Query:    5 AMEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESALHIRK 232
            A  + + M      P ++ YN L NG C  G M++A  ++++M   GL+PD ++Y+T+L GFC+  D++ AL +++
Sbjct:  399 AYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKR 474          

HSP 5 Score: 21.9422 bits (45), Expect = 7.438e-11
Identity = 6/20 (30.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:  225 LEKEMIKRGIELDNVPFTAL 284
            +++EM+++GI+ D + +++L
Sbjct:  472 VKREMVEKGIKPDTITYSSL 491          
BLAST of CX289017 vs. ExPASy Swiss-Prot
Match: PP120_ARATH (Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.696e-12
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 2
Query:    8 MEIYQLMLRKDLKPDLIMYNTLTNGLCKVGDMKEARKIVDEMCTNGLNPDKITYTTLLDGFCKEGDLESA 217
            ME Y+ M+ K   P+L  +N L   LC+   + EA  +++EM    +NPD +T+ TL+DGFCK GDL+ A
Sbjct:  516 METYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGA 585          
The following BLAST results are available for this feature:
BLAST of CX289017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PPR26_ARATH8.432e-2363.64Putative pentatricopeptide repeat-containing prote... [more]
PP442_ARATH4.194e-1440.54Pentatricopeptide repeat-containing protein At5g61... [more]
PPR12_ARATH1.220e-1344.74Pentatricopeptide repeat-containing protein At1g05... [more]
RF1_ORYSI2.719e-1344.59Protein Rf1, mitochondrial OS=Oryza sativa subsp. ... [more]
PP281_ARATH6.057e-1339.47Pentatricopeptide repeat-containing protein At3g53... [more]
PPR93_ARATH1.762e-1248.44Pentatricopeptide repeat-containing protein At1g62... [more]
PPR27_ARATH1.762e-1244.44Pentatricopeptide repeat-containing protein At1g09... [more]
PP306_ARATH1.762e-1241.89Pentatricopeptide repeat-containing protein At4g11... [more]
PP407_ARATH5.127e-1243.24Pentatricopeptide repeat-containing protein At5g39... [more]
PP120_ARATH6.696e-1242.86Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC02008B04SK IF1 Citrus clementina cDNA clone C02008B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289017 ID=CX289017; Name=CX289017; organism=Citrus clementina; type=EST; length=285bp
TATGGCAATGGAGATTTATCAGCTAATGCTGAGGAAAGATTTGAAACCTG
ATTTGATAATGTATAACACACTCACCAATGGTCTTTGCAAGGTTGGGGAT
ATGAAGGAAGCAAGGAAGATTGTTGATGAGATGTGCACGAATGGCTTGAA
TCCGGACAAGATTACTTATACTACCCTTCTTGATGGTTTTTGCAAGGAGG
GGGATTTGGAATCAGCATTGCATATTAGAAAAAGAAATGATTAAAAGAGG
AATTGAACTTGACAATGTGCCCTTCACAGCCCTTA
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