CX289021

Overview
NameCX289021
Unique NameCX289021
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length391
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289021 vs. ExPASy Swiss-Prot
Match: G6PD4_ARATH (Glucose-6-phosphate 1-dehydrogenase 4, chloroplastic OS=Arabidopsis thaliana GN=At1g09420 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.324e-18
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = -1
Query:  239 DVINGDNHLFMRSDELTAAWNILNPVL*EIDKNNIAPELYQLGGRGPVGVY 391
            DVI+GDNHLFMRSDE+ AAWNIL+PVL EIDK++ APELY+ GGRGPV  Y
Sbjct:  562 DVIDGDNHLFMRSDEVAAAWNILSPVLEEIDKHHTAPELYEFGGRGPVAAY 612          

HSP 2 Score: 24.6386 bits (52), Expect = 2.324e-18
Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = -2
Query:  199 PLECIYLWLKHGVH*TED 252
            P+   YLW KHGV   +D
Sbjct:  608 PVAAYYLWAKHGVPWADD 625          
BLAST of CX289021 vs. ExPASy Swiss-Prot
Match: G6PDC_SOLTU (Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.373e-11
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = -1
Query:  209 DVINGDNHLFMRSDELTAAWNILNPVL*EIDKNNIAPELYQLGGRGPVGVYLSLAE---TWGSL 391
            D I G+  LF+RSDEL AAW +  P+L E+++  IAPELY  G RGPVG +   A+    WG L
Sbjct:  510 DAIEGERRLFIRSDELDAAWALFTPLLKELEEKKIAPELYPYGSRGPVGAHYLAAKHNVRWGDL 573          
BLAST of CX289021 vs. ExPASy Swiss-Prot
Match: G6PDC_SPIOL (Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Spinacia oleracea GN=G6PD PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.458e-11
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = -1
Query:  209 DVINGDNHLFMRSDELTAAWNILNPVL*EIDKNNIAPELYQLGGRGPVGVYLSLAE---TWGSL 391
            D I G+  LF+RSD+L AAW++  P+L E+++  +APELY  G RGPVG +   A+    WG L
Sbjct:  506 DAIEGERRLFIRSDKLDAAWSLFTPLLKELEEKKVAPELYPYGSRGPVGAHYLAAKHNVRWGDL 569          
The following BLAST results are available for this feature:
BLAST of CX289021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
G6PD4_ARATH2.324e-1876.47Glucose-6-phosphate 1-dehydrogenase 4, chloroplast... [more]
G6PDC_SOLTU4.373e-1150.00Glucose-6-phosphate 1-dehydrogenase, chloroplastic... [more]
G6PDC_SPIOL7.458e-1146.88Glucose-6-phosphate 1-dehydrogenase, chloroplastic... [more]
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Properties
Property NameValue
Genbank descriptionC02008B08SK IF1 Citrus clementina cDNA clone C02008B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289021 ID=CX289021; Name=CX289021; organism=Citrus clementina; type=EST; length=391bp
GGCTGCAGGTTTTTTTTTTTCACCTACAAGAAAAATCCAATTTCAATAAG
GGGTTTATGCTATTGACACTTACCCTCTGAATCCGGATTGGCATTTCTCA
AGCCTAATTTCACACAATTTACATGTACAAAGCTACCATGTATTTGTCTT
AGTTGTGGAAAGATTGGCAACATTACCCCATAACAAGTGTTGCTTCTAAT
CTTCAGTCTAATGAACCCCATGTTTCAGCCAAAGATAAATACACTCCAAC
GGGACCTCTACCACCCAGCTGGTATAGTTCTGGTGCAATATTGTTCTTGT
CTATTTCCTATAAAACGGGGTTTAAAATATTCCATGCAGCAGTAAGCTCA
TCGCTTCTCATGAAGAGATGGTTGTCGCCGTTGATAACATC
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