CX289025

Overview
NameCX289025
Unique NameCX289025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11037 contig Ccv1_Contig11037:867..1250. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289025 vs. ExPASy Swiss-Prot
Match: P5CS_ACTDE (Delta-1-pyrroline-5-carboxylate synthetase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.655e-50
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = 1
Query:    1 GKRVGTLFHRDAHLW--VKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTS 384
            G+R+GTLFHRDA  W  V  VGAR+MAVAARESSRRLQA+  QDR KILLDVADALEANE LI++ENEAD+AAAQ+AGY KSL+SRLALK GKISSLAKSIR+LA+MEEPIG +LKRTE+ DGL+LEKTS
Sbjct:  273 GERIGTLFHRDAQKWAPVGDVGARDMAVAARESSRRLQAMSPQDRSKILLDVADALEANEKLIRIENEADLAAAQQAGYEKSLISRLALKSGKISSLAKSIRVLANMEEPIGHVLKRTEITDGLVLEKTS 402          
BLAST of CX289025 vs. ExPASy Swiss-Prot
Match: P5CS_MESCR (Delta-1-pyrroline-5-carboxylate synthetase OS=Mesembryanthemum crystallinum GN=P5CS PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.390e-49
Identity = 101/130 (77.69%), Postives = 116/130 (89.23%), Query Frame = 1
Query:    1 GKRVGTLFHRDAHLWV--KQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTS 384
            G+ VGTLFH+DAHLWV  K+ G R+MAVAARESSRRLQA+ S++R+KILLD+ADALEANE  I  ENEADVAAAQ AGY +SLV+RLA+ P KISSLAKSIR+LADMEEPIG+ILKRTE+ADGLILEKTS
Sbjct:  270 GQCVGTLFHKDAHLWVQVKETGVRDMAVAARESSRRLQAVSSEERKKILLDIADALEANEEKILAENEADVAAAQYAGYDRSLVARLAMNPDKISSLAKSIRVLADMEEPIGRILKRTEIADGLILEKTS 399          
BLAST of CX289025 vs. ExPASy Swiss-Prot
Match: P5CS1_ARATH (Delta-1-pyrroline-5-carboxylate synthetase A OS=Arabidopsis thaliana GN=P5CSA PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.773e-44
Identity = 91/130 (70.00%), Postives = 111/130 (85.38%), Query Frame = 1
Query:    1 GKRVGTLFHRDAHLW--VKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTS 384
            G RVGTLFH+DA LW  +    AR+MAVAARESSR+LQAL S+DR+KILLD+ADALEAN + IK ENE DVA+AQEAG  +S+V+RL + PGKISSLA S+R LADME+PIG++LK+TE+ADGL+LEKTS
Sbjct:  273 GLRVGTLFHQDARLWAPITDSNARDMAVAARESSRKLQALSSEDRKKILLDIADALEANVTTIKAENELDVASAQEAGLEESMVARLVMTPGKISSLAASVRKLADMEDPIGRVLKKTEVADGLVLEKTS 402          
BLAST of CX289025 vs. ExPASy Swiss-Prot
Match: P5CS_ORYSJ (Delta-1-pyrroline-5-carboxylate synthetase OS=Oryza sativa subsp. japonica GN=P5CS PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 3.024e-44
Identity = 92/130 (70.77%), Postives = 111/130 (85.38%), Query Frame = 1
Query:    1 GKRVGTLFHRDAHLWV--KQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTS 384
            G+++GTLFH++A+LW   K V  REMAVAAR+ SR LQ L S++R+KILLDVADALEANE LI+ ENEADVAAAQ AGY K LV+RL +KPGKI+SLAKSIR LA+ME+PI QILK+TE+AD L+LEKTS
Sbjct:  273 GEKIGTLFHKNANLWESSKDVSTREMAVAARDCSRHLQNLSSEERKKILLDVADALEANEDLIRSENEADVAAAQVAGYEKPLVARLTIKPGKIASLAKSIRTLANMEDPINQILKKTEVADDLVLEKTS 402          
BLAST of CX289025 vs. ExPASy Swiss-Prot
Match: P5CS2_ARATH (Delta-1-pyrroline-5-carboxylate synthetase B OS=Arabidopsis thaliana GN=P5CSB PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.797e-44
Identity = 90/130 (69.23%), Postives = 111/130 (85.38%), Query Frame = 1
Query:    1 GKRVGTLFHRDAHLWVKQVG--AREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTS 384
            G RVGTLFH+DAHLW   V   +R+MAVAARESSR+LQAL S+DR++IL D+A+ALE NE  IK EN+ DVAAAQEAGY +SLV+RL +KPGKISSLA S+R LA+ME+PIG++LK+T++AD LILEKTS
Sbjct:  273 GLRVGTLFHQDAHLWAPVVDTTSRDMAVAARESSRKLQALSSEDRKQILHDIANALEVNEKTIKAENDLDVAAAQEAGYEESLVARLVMKPGKISSLAASVRQLAEMEDPIGRVLKKTQVADDLILEKTS 402          
BLAST of CX289025 vs. ExPASy Swiss-Prot
Match: P5CS_SOLLC (Delta-1-pyrroline-5-carboxylate synthetase OS=Solanum lycopersicum GN=PRO2 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.501e-43
Identity = 90/130 (69.23%), Postives = 107/130 (82.31%), Query Frame = 1
Query:    1 GKRVGTLFHRDAHLW--VKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTS 384
            G+R+GTLFH DA+ W  + +  AREMAVAAR  SRRLQAL SQ+R KIL D+ADALEANE  I  ENEADV AAQ+AGY KSL+SRLAL PGKISSLA S+R+L++M+EP+G  LKRTE+ADG ILEK+S
Sbjct:  273 GERIGTLFHCDANKWASIGETDAREMAVAARACSRRLQALSSQERSKILQDIADALEANEKAILAENEADVVAAQQAGYEKSLISRLALNPGKISSLANSVRVLSNMDEPLGHTLKRTEIADGFILEKSS 402          
BLAST of CX289025 vs. ExPASy Swiss-Prot
Match: P5CS_VIGAC (Delta-1-pyrroline-5-carboxylate synthetase OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.830e-42
Identity = 94/133 (70.68%), Postives = 113/133 (84.96%), Query Frame = 1
Query:    1 GKRVGTLFHRDAHLW--VKQVGAREMAVAA---RESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTS 384
            G+R+GTLFH+DAH W  VK+V AREMAVAA   RE SRR   LQ +   KILL +ADALEANE +I++ENEADV AAQEAGY KSLV+RLALKPGKI+SLA ++RI+A+ME+PIG++LKRTEL+DGLILEKTS
Sbjct:  274 GQRIGTLFHKDAHEWAQVKEVDAREMAVAAGNVREGSRRY--LQRKGN-KILLKIADALEANEKIIRIENEADVTAAQEAGYEKSLVARLALKPGKIASLANNMRIIANMEDPIGRVLKRTELSDGLILEKTS 403          
BLAST of CX289025 vs. ExPASy Swiss-Prot
Match: PROA_ECOSE (Gamma-glutamyl phosphate reductase OS=Escherichia coli (strain SE11) GN=proA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.487e-14
Identity = 35/104 (33.65%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   67 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEK 378
            +M +AA+++S +L  L S+++ ++L  +AD LEA   +I   N  DVA A+  G  ++++ RLAL P ++  +A  +R + ++ +P+GQ++  + L  GL LE+
Sbjct:    4 QMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLGEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGSVLDSGLRLER 107          
BLAST of CX289025 vs. ExPASy Swiss-Prot
Match: PROA_ECOHS (Gamma-glutamyl phosphate reductase OS=Escherichia coli O9:H4 (strain HS) GN=proA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.487e-14
Identity = 35/104 (33.65%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   67 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEK 378
            +M +AA+++S +L  L S+++ ++L  +AD LEA   +I   N  DVA A+  G  ++++ RLAL P ++  +A  +R + ++ +P+GQ++  + L  GL LE+
Sbjct:    4 QMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLGEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGSVLDSGLRLER 107          
BLAST of CX289025 vs. ExPASy Swiss-Prot
Match: PROA_ECO8A (Gamma-glutamyl phosphate reductase OS=Escherichia coli O8 (strain IAI1) GN=proA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.487e-14
Identity = 35/104 (33.65%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   67 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEK 378
            +M +AA+++S +L  L S+++ ++L  +AD LEA   +I   N  DVA A+  G  ++++ RLAL P ++  +A  +R + ++ +P+GQ++  + L  GL LE+
Sbjct:    4 QMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLGEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGSVLDSGLRLER 107          
The following BLAST results are available for this feature:
BLAST of CX289025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
P5CS_ACTDE1.655e-5078.46Delta-1-pyrroline-5-carboxylate synthetase OS=Acti... [more]
P5CS_MESCR2.390e-4977.69Delta-1-pyrroline-5-carboxylate synthetase OS=Mese... [more]
P5CS1_ARATH1.773e-4470.00Delta-1-pyrroline-5-carboxylate synthetase A OS=Ar... [more]
P5CS_ORYSJ3.024e-4470.77Delta-1-pyrroline-5-carboxylate synthetase OS=Oryz... [more]
P5CS2_ARATH8.797e-4469.23Delta-1-pyrroline-5-carboxylate synthetase B OS=Ar... [more]
P5CS_SOLLC1.501e-4369.23Delta-1-pyrroline-5-carboxylate synthetase OS=Sola... [more]
P5CS_VIGAC2.830e-4270.68Delta-1-pyrroline-5-carboxylate synthetase OS=Vign... [more]
PROA_ECOSE9.487e-1433.65Gamma-glutamyl phosphate reductase OS=Escherichia ... [more]
PROA_ECOHS9.487e-1433.65Gamma-glutamyl phosphate reductase OS=Escherichia ... [more]
PROA_ECO8A9.487e-1433.65Gamma-glutamyl phosphate reductase OS=Escherichia ... [more]

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Properties
Property NameValue
Genbank descriptionC02008B12SK IF1 Citrus clementina cDNA clone C02008B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289025 ID=CX289025; Name=CX289025; organism=Citrus clementina; type=EST; length=384bp
GGAAAGCGTGTTGGGACTCTCTTTCATAGAGATGCACATTTGTGGGTAAA
ACAAGTTGGGGCCCGTGAGATGGCAGTTGCAGCACGAGAAAGTTCTAGAC
GGCTTCAGGCTCTACAATCTCAAGATAGGAGGAAAATTTTGCTCGACGTA
GCTGATGCCTTAGAGGCAAATGAAAGCTTGATTAAGGTTGAGAATGAAGC
CGATGTAGCTGCTGCACAGGAAGCTGGATATGCGAAATCACTAGTATCAC
GTTTGGCACTGAAGCCTGGGAAGATCTCTAGCCTTGCAAAATCTATTCGT
ATACTTGCAGACATGGAAGAACCCATTGGTCAAATTTTAAAGAGAACAGA
GCTTGCGGATGGACTCATCCTGGAGAAAACATCA
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