CX289026

Overview
NameCX289026
Unique NameCX289026
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length356
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10270 contig Ccv1_Contig10270:32..387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.467e-48
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            MVSLK+QKRL+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL
Sbjct:    1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.528e-48
Identity = 92/102 (90.20%), Postives = 99/102 (97.06%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            MVSLKLQKRL+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRKGTREARLPTK+LWMRRMRVL
Sbjct:    1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 1.457e-46
Identity = 90/102 (88.24%), Postives = 98/102 (96.08%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVL
Sbjct:    1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.907e-38
Identity = 73/102 (71.57%), Postives = 87/102 (85.29%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M SLKLQKRL+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR R R+  EA+RKGRH G+GKRKGT  AR+PTK+LWM+R RVL
Sbjct:    1 MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.696e-37
Identity = 70/102 (68.63%), Postives = 87/102 (85.29%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            MVSLKLQKRL+AS+LKCG+G+VW+DPNE+ +++MANSR N+R+L+  GFI+RKP  +HSRSRAR    AKR GRH G G R GTREARLP+KILW+RR+RVL
Sbjct:    1 MVSLKLQKRLAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGFIMRKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 4.696e-37
Identity = 71/102 (69.61%), Postives = 86/102 (84.31%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M +L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQNIRKLVKDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ ++WMRR RVL
Sbjct:    1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.011e-37
Identity = 71/102 (69.61%), Postives = 88/102 (86.27%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M +L+LQKRL+++VLKCG+ +VWLDPNEV+EIS ANSRQ+IR+LV DG IIRKP  +HSR RAR  +EA+RKGRH+GYGKR+GT  AR+P K LW+RRMRVL
Sbjct:    1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 8.011e-37
Identity = 69/102 (67.65%), Postives = 86/102 (84.31%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M +L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQN+RKL+KDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ ++WMRR RVL
Sbjct:    1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.857e-36
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+L
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRIL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.857e-36
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+L
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRIL 102          
The following BLAST results are available for this feature:
BLAST of CX289026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL192_ARATH3.467e-4890.2060S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL191_ARATH4.528e-4890.2060S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL193_ARATH1.457e-4688.2460S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL19_DROME1.907e-3871.5760S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_DICDI4.696e-3768.6360S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19B_SCHPO4.696e-3769.6160S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19_CAEEL8.011e-3769.6160S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19A_SCHPO8.011e-3767.6560S ribosomal protein L19-A OS=Schizosaccharomyces... [more]
RL19_RAT8.857e-3667.6560S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB8.857e-3667.6560S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]

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Properties
Property NameValue
Genbank descriptionC02008C01SK IF1 Citrus clementina cDNA clone C02008C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289026 ID=CX289026; Name=CX289026; organism=Citrus clementina; type=EST; length=356bp
GTTGGCCACTGATCGCGAGAGACAGAGGGGGAGAGAAGAGAAGGGAAAAT
GGTGTCGTTGAAGTTACAGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCG
GACGTGGCAAGGTCTGGCTTGACCCTAATGAGGTCAACGAAATCTCCATG
GCCAACTCCAGGCAGAACATTAGGAAATTGGTGAAGGATGGTTTCATCAT
CAGGAAGCCAACAAAGATCCACTCCCGTTCTCGCGCTCGCAGAATGAAGG
AAGCCAAGAGGAAGGGCCGTCACTCTGGATATGGTAAGAGAAAGGGTACT
AGGGAGGCGAGGCTTCCCACCAAAATCCTCTGGATGAGAAGGATGCGTGT
GCTCAG
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