CX289038

Overview
NameCX289038
Unique NameCX289038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length371
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289038 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.431e-46
Identity = 89/123 (72.36%), Postives = 106/123 (86.18%), Query Frame = 3
Query:    3 LLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKS 371
            L+EKVQHELL V+A+QLLEKEHSGC ALLRDDKV+DLSRM+RL+ KI RGL+PV+NIFKQHVTAEG ALV+ AED A+N+ A   +   +QEQV +RKVIELHDKY+ YV +CFQNHTLFHK+
Sbjct:  247 LVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVANIFKQHVTAEGNALVQQAEDTATNQVA---NTASVQEQVLIRKVIELHDKYMVYVTECFQNHTLFHKA 366          
The following BLAST results are available for this feature:
BLAST of CX289038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CUL1_ARATH5.431e-4672.36Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC02008D04SK IF1 Citrus clementina cDNA clone C02008D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289038 ID=CX289038; Name=CX289038; organism=Citrus clementina; type=EST; length=371bp
AGTTACTAGAGAAAGTTCAACATGAGTTATTGTCAGTATATGCAAATCAA
CTGCTTGAGAAAGAGCACTCAGGATGCCATGCATTGCTCAGAGACGACAA
GGTGGAGGATTTGTCAAGAATGTTCAGGCTCTTTTCTAAAATACCCCGAG
GCTTAGATCCTGTTTCGAACATCTTTAAGCAGCATGTTACTGCTGAAGGT
ACAGCCTTGGTGAAACTGGCTGAAGATGCAGCAAGCAATAAGAAGGCAGA
GAAAAGGGATGTGGTCGGCTTACAGGAGCAGGTTTTTGTCAGGAAAGTGA
TTGAGTTGCATGACAAGTACTTAGCATATGTAAATGATTGTTTCCAGAAC
CACACTCTCTTCCATAAGTCT
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