CX289040

Overview
NameCX289040
Unique NameCX289040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length428
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1036 contig Ccv1_Contig1036:352..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKIL5_ARATH (KH domain-containing protein At1g09660 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.358e-54
Identity = 98/134 (73.13%), Postives = 112/134 (83.58%), Query Frame = 3
Query:   24 SFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHL 425
            SF D +R+EH SPFRSLGQP    +DLEG S MQ EEN HLQR +PF+ P  +GW G+PG+P  P+VK+VIRLDVPVDKYP++NFVGRILGPRGNSLKRVE  T CRVFIRGRGSVKD++KEEKLK KPGYEHL
Sbjct:   79 SFPDLDRYEHGSPFRSLGQPTNGKLDLEGWSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHL 212          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKIL4_ARATH (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.123e-33
Identity = 77/141 (54.61%), Postives = 90/141 (63.83%), Query Frame = 3
Query:   18 NPSFVDHERFEHDSPFRSLGQPNGRPM----DLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            N  F D +R  H SP   +  PN         L G + +  E  G    MA       M WQG P  P++  VKR++RLD+PVD YPNFNFVGR+LGPRGNSLKRVEA T CRV+IRG+GS+KD  KEEKLK KPGYEHLN
Sbjct:   69 NQGFTDFDRLRHRSP-SPMASPNLMSNVSGGGLGGWNGLPPERIGGPHGMA-------MEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHLN 201          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKIL3_ARATH (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.915e-33
Identity = 72/137 (52.55%), Postives = 87/137 (63.50%), Query Frame = 3
Query:   18 NPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            N  F D +R  H SP           +   GL       NG  Q         +M WQG PG P++  VKR++RL++PVD YPNFNFVGR+LGPRGNSLKRVEA T CRVFIRG+GS+KD  KE+KL+ +PGYEHLN
Sbjct:   70 NQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGW----NGLSQERLSGTPGMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHLN 202          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKIL1_ARATH (KH domain-containing protein At4g26475 OS=Arabidopsis thaliana GN=At4g26475 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.279e-33
Identity = 68/133 (51.13%), Postives = 86/133 (64.66%), Query Frame = 3
Query:   30 VDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            +   RF+H SP  S G       D+ G ++    E           + P+  W   PG  +  +VKR IR+D+PVDKYPN+NFVGR+LGPRGNSLKRVEA T+CRV IRGRGS+KD IKE+ ++ KPGYEHLN
Sbjct:  101 LSQSRFDHPSPLASGGIFQNSRADMNGWASQFPSERS-------VSSSPAPNWLNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHLN 226          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKIL2_ARATH (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.373e-31
Identity = 69/137 (50.36%), Postives = 85/137 (62.04%), Query Frame = 3
Query:   18 NPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            N + +     +H SP  S G       D+ G ++    E     R  P  + P   W   PG  +  + KR IR+D+PVD YPNFNFVGR+LGPRGNSLKRVEA T+CRV IRGRGS+KD IKEE ++ KPGYEHLN
Sbjct:  103 NATVLSQSGLDHPSPLASGGIFQNARADMNGWASQFPSE-----RSVP--SSPGPNWLNSPGSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLN 232          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKI_RAT (Protein quaking OS=Rattus norvegicus GN=Qki PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  216 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKI_PIG (Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  216 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKI_MOUSE (Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  216 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKI_HUMAN (Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  216 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKI_HORSE (Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  216 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
The following BLAST results are available for this feature:
BLAST of CX289040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
QKIL5_ARATH3.358e-5473.13KH domain-containing protein At1g09660 OS=Arabidop... [more]
QKIL4_ARATH1.123e-3354.61KH domain-containing protein At3g08620 OS=Arabidop... [more]
QKIL3_ARATH1.915e-3352.55KH domain-containing protein At2g38610 OS=Arabidop... [more]
QKIL1_ARATH7.279e-3351.13KH domain-containing protein At4g26475 OS=Arabidop... [more]
QKIL2_ARATH1.373e-3150.36KH domain-containing protein At5g56140 OS=Arabidop... [more]
QKI_RAT1.473e-1754.93Protein quaking OS=Rattus norvegicus GN=Qki PE=1 S... [more]
QKI_PIG1.473e-1754.93Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1[more]
QKI_MOUSE1.473e-1754.93Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1[more]
QKI_HUMAN1.473e-1754.93Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1[more]
QKI_HORSE1.473e-1754.93Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02008D07SK IF1 Citrus clementina cDNA clone C02008D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289040 ID=CX289040; Name=CX289040; organism=Citrus clementina; type=EST; length=428bp
TCGCACGAGGGGGTTACAATCCAAGTTTTGTTGATCATGAAAGGTTTGAG
CATGATAGCCCATTTAGGTCATTAGGTCAGCCAAATGGAAGACCAATGGA
TTTGGAGGGTTTGTCTGCAATGCAAACTGAGGAAAATGGGCATCTTCAAA
GAATGGCCCCTTTTCAAACTCCTCCTTCAATGGGCTGGCAAGGTATTCCT
GGAATTCCAACCACACCTGTTGTAAAGAGAGTTATTAGACTTGATGTTCC
TGTGGATAAATATCCAAATTTTAATTTTGTCGGCCGGATTTTGGGACCGC
GTGGGAACTCGCTCAAAAGAGTCGAAGCCATGACAGAATGTAGGGTGTTC
ATTAGAGGCCGGGGTTCAGTCAAGGATTCGATAAAGGAAGAAAAACTTAA
AGATAAACCTGGATATGAGCATCTTAAT
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