CX289048

Overview
NameCX289048
Unique NameCX289048
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289048 vs. ExPASy Swiss-Prot
Match: DEGP2_ARATH (Protease Do-like 2, chloroplastic OS=Arabidopsis thaliana GN=DEGP2 PE=1 SV=2)

HSP 1 Score: 333.569 bits (854), Expect = 5.023e-91
Identity = 164/207 (79.23%), Postives = 181/207 (87.44%), Query Frame = 1
Query:    1 TSDANNILKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAELGIIRAGTFMKVKVVLNPRVHLVPYHIDGGQPSYLIIAGLVFTPLSEPLIEEECDDSIGLKLLAKARYSLARFEGEQMVILSQVLANEVSIGYEDMSNQQVLKFNGTRIKNIHHLAHLVDSCKDKYLVFEFEDNYXXXXXXXXXXXXXXCILKDY 621
            TSDA+ +LKEGDVIVSFDD+ VG EGTVPFRS+ERIAFRYLISQKFAGD+AE+GIIRAG   KV+VVL PRVHLVPYHIDGGQPSY+I+AGLVFTPLSEPLIEEEC+D+IGLKLL KARYS+ARF GEQ+VILSQVLANEV+IGYEDM+NQQVLKFNG  I+NIHHLAHL+D CKDKYLVFEFEDNY              CILKDY
Sbjct:  355 TSDASKVLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLIEEECEDTIGLKLLTKARYSVARFRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHLAHLIDMCKDKYLVFEFEDNYVAVLEREASNSASLCILKDY 561          
BLAST of CX289048 vs. ExPASy Swiss-Prot
Match: DEGP9_ARATH (Protease Do-like 9 OS=Arabidopsis thaliana GN=DEGP9 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.934e-38
Identity = 78/188 (41.49%), Postives = 123/188 (65.43%), Query Frame = 1
Query:    1 TSDANNILKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAELGIIRAGTFMKVKVVLNPRVHLVPYHIDGGQPSYLIIAGLVFTPLSEPLIE----EECDDSIGLKLLAKARYSLARFEGEQMVILSQVLANEVSIGYEDMSNQQVLKFNGTRIKNIHHLAHLVDSCKDKYLVFEFE 552
            T+  + +LK  D+I+SFD V + ++GTVPFR  ERI F YLISQK+ GD A + ++R    ++  + L     L+P HI G  PSY I+AG VFT +S P +     +E +    +KLL K  +++A+   EQ+V++SQVL ++++IGYE++ N QV+ FNG  +KN+  LA +V++C+D+Y+ F  +
Sbjct:  366 TAPESQVLKPSDIILSFDGVNIANDGTVPFRHGERIGFSYLISQKYTGDSALVKVLRNKEILEFNIKLAIHKRLIPAHISGKPPSYFIVAGFVFTTVSVPYLRSEYGKEYEFDAPVKLLEKHLHAMAQSVDEQLVVVSQVLVSDINIGYEEIVNTQVVAFNGKPVKNLKGLAGMVENCEDEYMKFNLD 553          
BLAST of CX289048 vs. ExPASy Swiss-Prot
Match: DGP10_ARATH (Protease Do-like 10, mitochondrial OS=Arabidopsis thaliana GN=DEGP10 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32
Identity = 72/187 (38.50%), Postives = 112/187 (59.89%), Query Frame = 1
Query:    4 SDANNILKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAELGIIRAGTFMKVKVVLNPRVHLVPYHIDGGQPSYLIIAGLVFTPLSEPLIEEECDDSIGLK---LLAKARYSLARFEGEQMVILSQVLANEVSIGYEDMSNQQVLKFNGTRIKNIHHLAHLVDSCKDKYLVFEFED 555
            SDA+ ILK+ DV+++FD V + ++GTVPFR+ ERI F +L+S K   + A + ++R G   +  + L P   LVP H     PSY I AG VF PL++P + E  +D        L  +A   L +  G+Q+VI+SQVL ++++ GYE ++  QV K NG  + N+ HL  L+++C  + L  + +D
Sbjct:  351 SDAHKILKKDDVLLAFDGVPIANDGTVPFRNRERITFDHLVSMKKPDETALVKVLREGKEHEFSITLRPLQPLVPVHQFDQLPSYYIFAGFVFVPLTQPYLHEYGEDWYNTSPRTLCHRALKDLPKKAGQQLVIVSQVLMDDINTGYERLAELQVNKVNGVEVNNLRHLCQLIENCNTEKLRIDLDD 537          
BLAST of CX289048 vs. ExPASy Swiss-Prot
Match: DEGP3_ARATH (Putative protease Do-like 3, mitochondrial OS=Arabidopsis thaliana GN=DEGP3 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.820e-24
Identity = 65/193 (33.68%), Postives = 102/193 (52.85%), Query Frame = 1
Query:    4 SDANNILKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAELGIIRAGTFMKVKVVLNPRVHLVPYHIDGGQPSYLIIAGLVFTPLSEPLIEEECDDSIGLKLLAKARYSLARFEGEQMVILSQVLANEVSIGYEDMSNQQVLKFNGTRIKNIHHLAHLVDSC----------KDKYLVFEFE 552
            SD + +LK+ D+I++ D V +G++ +V FR  ERI F++L+S K   + A L ++R G   +    L     LVP        SY I  GLVF PL++P I+  C     L  + K         GEQ+VI+SQ+L ++++ GY    + QV K NG ++ N+ HL  LV+ C          KDK +  +++
Sbjct:  333 SDVHKVLKKDDIILAIDGVPIGNDSSVHFRKKERITFKHLVSMKKPCETALLKVLREGKEYEFNSSLKSVPPLVPKRQYDKSASYYIFGGLVFLPLTKPYIDSSCVSESALGKMPKK-------AGEQVVIISQILEDDINTGYSIFEDFQVKKVNGVQVHNLKHLYKLVEECCTETVRMDLEKDKVITLDYK 518          
BLAST of CX289048 vs. ExPASy Swiss-Prot
Match: DEGP4_ARATH (Protease Do-like 4, mitochondrial OS=Arabidopsis thaliana GN=DEGP4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.377e-24
Identity = 62/184 (33.70%), Postives = 103/184 (55.98%), Query Frame = 1
Query:    4 SDANNILKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAELGIIRAGTFMKVKVVLNPRVHLVPYHIDGGQPSYLIIAGLVFTPLSEPLIEEECDDSIGLKLLAKARYSLARFEGEQMVILSQVLANEVSIGYEDMSNQQVLKFNGTRIKNIHHLAHLVDSCKDKYLVFEFED 555
            SDA   L++ D+I++ DDV +G++  V FR+ ERI F + +S K   +   L ++R G   +  +++ P   LVP H     PSY I AG VF PL++P I+     +  +K + +         GEQ+     VLA++++ GY D  N +V+K NG +++N+ HL  LV++C  + L  + E+
Sbjct:  311 SDAYKRLRKDDIILAIDDVLIGNDAKVTFRNKERINFNHFVSMKKLDETVLLQVLRDGKEHEFHIMVKPVPPLVPGHQYDKLPSYYIFAGFVFVPLTQPYIDSTLICNCAIKYMPEK-------AGEQL-----VLADDINAGYTDFKNLKVIKVNGVQVENLKHLTELVETCWTEDLRLDLEN 482          
BLAST of CX289048 vs. ExPASy Swiss-Prot
Match: DGP13_ARATH (Putative protease Do-like 13 OS=Arabidopsis thaliana GN=DEGP13 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 61/184 (33.15%), Postives = 90/184 (48.91%), Query Frame = 1
Query:    4 SDANNILKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAELGIIRAGTFMKVKVVLNPRVHLVPYHIDGGQPSYLIIAGLVFTPLSEPLIEEECDDSIGLKLLAKARYSLARFEGEQMVILSQVLANEVSIGYEDMSNQQVLKFNGTRIKNIHHLAHLVDSCKDKYLVFEFED 555
            SDA NILK+ DVI+S D V + ++GTV   + ER     L+S K  G+   L I+R G   +  + L P   LVP       PSY I AG VF PL +   +                       GEQ+V++S+VLA+ +++ Y    + +V   N  +++N+ HL  L++ C  K L  E  D
Sbjct:  277 SDALNILKKYDVILSIDGVAIENDGTVIIPNRERTRLDDLVSLKQLGETILLKILREGKMHEFNITLRPVQRLVPAGQIDNNPSYYIFAGFVFVPLRKQHFKGS--------------------NGEQIVVISEVLADVINVEYYMYKHLKVNSVNKVKVENLKHLCELIEKCCTKDLRLELGD 440          
BLAST of CX289048 vs. ExPASy Swiss-Prot
Match: DGP11_ARATH (Putative protease Do-like 11, mitochondrial OS=Arabidopsis thaliana GN=DEGP11 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17
Identity = 55/191 (28.80%), Postives = 94/191 (49.21%), Query Frame = 1
Query:    1 TSDANNILKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAELGIIRAGTFMKVKVVLNPRVHLVPYHIDGGQPSYLIIAGLVFTPLSEPLIEEECDDSIGLKLLAKARYSLARFEGEQMVILSQVLANEVSIGYEDMSN-----QQVLKFNGTRIKNIHHLAHLVDSCKDKYLVFEFEDN 558
            +S A  IL++ D+I++ D V +G++  VPF++  RI F YL+S K  G+ A + ++R G   +  + L P             PSY I  G VF PL++  ++ E                         V +S+ LA++++ GY+ +       +QV K NG  +KN+ HL  L++ C  + L  EF+++
Sbjct:  336 SSGAYKILRKDDIILAIDGVPIGNDEKVPFQNKRRIDFSYLVSMKKPGEKALVKVLRNGKEYEYNISLKPVKPNFTVQQFYNVPSYYIFGGFVFVPLTKTYLDSE----------------------HHQVKISERLADDINEGYQSLYGAQLWWEQVEKVNGVEVKNLKHLCELIEECSTEDLRLEFKNH 504          
BLAST of CX289048 vs. ExPASy Swiss-Prot
Match: DGP12_ARATH (Putative protease Do-like 12, mitochondrial OS=Arabidopsis thaliana GN=DEGP12 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.054e-16
Identity = 58/190 (30.53%), Postives = 95/190 (50.00%), Query Frame = 1
Query:    1 TSDANNILKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAELGIIRAGTFMKVKVVLNPRVHLVPYHIDGGQ----PSYLIIAGLVFTPLSEPLIEEECDDSIGLKLLAKARYSLARFEGEQMVILSQVLANEVSIGYEDMSNQQVLKFNGTRIKNIHHLAHLVDSCKDKYLVFEFEDN 558
            +S A+ IL++ D+I++ D V V SE         RI+F + IS K   +   + ++R G   +  + L P    V  HI   Q    PSY I  G VF PL++  I+++                  +   EQ VI+SQV+ ++++ GY +  + QV K NG ++KN+ HL  L++ C  K L  + E++
Sbjct:  307 SSGAHKILRKDDIILAIDGVPVLSE-------MRRISFNHFISMKKPDENILVKVLRKGKEHEYNISLKP----VKPHIQVQQYYNLPSYYIFGGFVFVPLTKSYIDDK----------------YYKITDEQHVIISQVMPDDINKGYSNFKDLQVEKVNGVKVKNLKHLRELIEGCFSKDLRLDLEND 469          
The following BLAST results are available for this feature:
BLAST of CX289048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
DEGP2_ARATH5.023e-9179.23Protease Do-like 2, chloroplastic OS=Arabidopsis t... [more]
DEGP9_ARATH4.934e-3841.49Protease Do-like 9 OS=Arabidopsis thaliana GN=DEGP... [more]
DGP10_ARATH3.097e-3238.50Protease Do-like 10, mitochondrial OS=Arabidopsis ... [more]
DEGP3_ARATH1.820e-2433.68Putative protease Do-like 3, mitochondrial OS=Arab... [more]
DEGP4_ARATH2.377e-2433.70Protease Do-like 4, mitochondrial OS=Arabidopsis t... [more]
DGP13_ARATH2.302e-1933.15Putative protease Do-like 13 OS=Arabidopsis thalia... [more]
DGP11_ARATH1.263e-1728.80Putative protease Do-like 11, mitochondrial OS=Ara... [more]
DGP12_ARATH9.054e-1630.53Putative protease Do-like 12, mitochondrial OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC02008E05SK IF1 Citrus clementina cDNA clone C02008E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289048 ID=CX289048; Name=CX289048; organism=Citrus clementina; type=EST; length=622bp
ACATCCGATGCTAATAATATCTTAAAGGAGGGGGACGTGATTGTAAGCTT
TGATGATGTCTGTGTGGGGTCTGAAGGAACTGTGCCATTCCGTTCAAATG
AGCGCATTGCATTCCGCTATCTCATTAGTCAAAAATTTGCAGGCGATGTA
GCAGAGCTCGGTATTATTAGAGCAGGGACATTCATGAAAGTTAAAGTAGT
CTTAAATCCACGAGTGCACTTGGTTCCGTATCATATTGATGGAGGCCAGC
CTTCTTATCTCATAATTGCTGGTTTGGTGTTTACCCCTCTCTCGGAACCA
CTGATAGAGGAAGAATGTGATGACTCCATAGGGCTGAAACTGCTAGCCAA
GGCACGATACTCTTTGGCAAGGTTCGAAGGAGAACAAATGGTGATCCTAT
CACAGGTCTTAGCAAATGAAGTAAGCATTGGATATGAGGATATGAGCAAT
CAGCAGGTTTTGAAGTTCAATGGAACTAGAATAAAAAACATCCATCACCT
AGCCCACCTAGTCGATTCATGCAAGGACAAGTATCTAGTTTTCGAGTTTG
AAGATAATTATCTTGCTGTTTTGGAGAGAGAAGCAGCAGTAGCTGCTTCA
TCATGCATTCTCAAAGATTATG
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