CX289053

Overview
NameCX289053
Unique NameCX289053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289053 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.519e-17
Identity = 40/73 (54.79%), Postives = 57/73 (78.08%), Query Frame = 2
Query:    2 LESEKARKRREKMDETETKIRALREEELSHLGRIESEYKEQLSALQRDAESKEAKLMEAWCSRHVKLLKLVEQ 220
            LESEK  ++REKM+E E K++ALREE+ + + +IE EY+EQL  L+RDAE+K+ KL + W SRH++L K +EQ
Sbjct:  286 LESEKTCRQREKMEEIEAKMKALREEQKNAMEKIEGEYREQLVGLRRDAEAKDQKLADQWTSRHIRLTKFLEQ 358          
BLAST of CX289053 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.113e-15
Identity = 35/74 (47.30%), Postives = 58/74 (78.38%), Query Frame = 2
Query:    2 LESEKARKRREKMDETETKIRALREEELSHLGRIESEYKEQLSALQRDAESKEAKLMEAWCSRHVKLLKLVEQI 223
            LE+E+A +RRE  +E E K+RALREE+ + + R+E+EY+E+++ L+RDAE+KE K+ E W ++H +L K ++Q+
Sbjct:  246 LETERACRRREATEEFEAKMRALREEQAAAVERVEAEYREKMAGLRRDAEAKEQKMAEQWAAKHARLAKFLDQV 319          
BLAST of CX289053 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.466e-12
Identity = 30/75 (40.00%), Postives = 52/75 (69.33%), Query Frame = 2
Query:    2 LESEKARKRREKMDETETKIRALREEELSHLGRIESEYKEQLSALQRDAESKEAKLMEAWCSRHVKLLKLVEQIG 226
            LE E+  +RRE  +E E K+R +R E+ +   R+E +++E+++ L+RDA+ KE K+ E W ++H ++ K VEQ+G
Sbjct:  282 LEMEREMRRREVWEEFEAKMRTMRLEQAAAAERVERDHREKVAELRRDAQVKEEKMAEQWAAKHARVAKFVEQMG 356          
The following BLAST results are available for this feature:
BLAST of CX289053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AS1_ARATH4.519e-1754.79Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
RS2_ORYSJ1.113e-1547.30Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
RS2_MAIZE7.466e-1240.00Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionC02008E10SK IF1 Citrus clementina cDNA clone C02008E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289053 ID=CX289053; Name=CX289053; organism=Citrus clementina; type=EST; length=435bp
GTTGGAGTCCGAGAAAGCAAGAAAGAGGAGGGAAAAGATGGATGAAACTG
AAACAAAGATAAGGGCTTTGAGAGAAGAGGAATTGTCTCATCTTGGGAGA
ATTGAGAGTGAGTATAAAGAGCAGCTGAGTGCTTTGCAGAGAGATGCTGA
GAGTAAAGAAGCTAAGTTAATGGAAGCATGGTGTAGCAGGCATGTTAAAC
TGCTTAAGCTTGTTGAGCAAATTGGAGTTCATCAAAGCAGCACTTCTCAT
GGATTCTGTGTCGTCCCAAAGGATATGCACTAACCGGCCATAGCTAATTA
AGGCCTGCATTTGGATTTTGCGACCGTTTTTGATAAGGCATAATGTGATA
GATAAGACTTTGATTCCTTGAACCCATGTAGCTATTGTGTTGTTTTTTTT
TTTTTCTTATATATATCCTTAAGAACTTCGATCAA
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