CX289055

Overview
NameCX289055
Unique NameCX289055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14194 contig Ccv1_Contig14194:666..1171. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO1_ARATH (Protein argonaute OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 5.046e-44
Identity = 90/118 (76.27%), Postives = 90/118 (76.27%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 354
            GIQGTSRPAHYHVLWDEN FTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS                          V AAVRPLPALKENVKRVMFYC
Sbjct:  934 GIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS---GSMASGSMARGGGMAGRSTRGPNVNAAVRPLPALKENVKRVMFYC 1048          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO1A_ORYSJ (Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.623e-42
Identity = 87/118 (73.73%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 354
            GIQGTSRPAHYHVLWDENKFTADGLQ+LTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP+TSDS                          V  AVRPLP LKENVKRVMFYC
Sbjct:  967 GIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDSGSMASGAHTRGGGPLPGARSTKPAGNV--AVRPLPDLKENVKRVMFYC 1082          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO1B_ORYSJ (Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 2.769e-42
Identity = 87/118 (73.73%), Postives = 88/118 (74.58%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 354
            GIQGTSRPAHYHVLWDENKFTAD LQ+LTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS                             AVRPLPALKENVKRVMFYC
Sbjct: 1004 GIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGAATSRGLPPGVRSARVAG---NVAVRPLPALKENVKRVMFYC 1118          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO1C_ORYSJ (Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.163e-40
Identity = 83/118 (70.34%), Postives = 88/118 (74.58%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 354
            GI+GTSRPAHYHVLWDEN FTAD LQ LTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP+TSDS                           GAAV+PLPALK++VKRVMFYC
Sbjct:  896 GIKGTSRPAHYHVLWDENNFTADALQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDSSSVVSGPGVRGPLSGSSTSRTRAPG--GAAVKPLPALKDSVKRVMFYC 1011          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: PINH_ARATH (Protein PINHEAD OS=Arabidopsis thaliana GN=At5g43810 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.888e-39
Identity = 80/118 (67.80%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 354
            GIQGTSRPAHYHVLWDEN FTADG+QSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY+EPE                                  V+PLPALKENVKRVMFYC
Sbjct:  883 GIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGSPGKKNTKTTTVG------------DVGVKPLPALKENVKRVMFYC 988          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO1D_ORYSJ (Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.383e-39
Identity = 80/118 (67.80%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 354
            GI+GTSRPAHYHVLWDEN FTAD LQ+LTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYME ++SDS                           G AVRPLPALK++VK VMFYC
Sbjct:  927 GIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMESDSSDSGSMASGRGGGSSTSRSTRAAG------GGAVRPLPALKDSVKNVMFYC 1038          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: PNH1_ORYSJ (Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 8.337e-39
Identity = 78/118 (66.10%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 354
            GIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFYMEPE S++                           G +V+PLPA+KE VKRVMFYC
Sbjct:  878 GIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMSENQTTSKSSTGTN----------------GTSVKPLPAVKEKVKRVMFYC 979          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGOL_ARATH (Argonaute-like protein At2g27880 OS=Arabidopsis thaliana GN=At2g27880 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.539e-35
Identity = 75/118 (63.56%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 354
            GIQGTSRPAHYHVL DEN FTAD LQ LTNNLCYTYARCT+SVSIVPPAYYAHLAAFRAR+YME E SD                           VG  +  LPA+K+NVK VMFYC
Sbjct:  895 GIQGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYMESEMSDG---------------GSSRSRSSTTGVGQVISQLPAIKDNVKEVMFYC 997          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: MEL1_ORYSJ (Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.625e-34
Identity = 73/118 (61.86%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 354
            GIQGTSRP HYHVL+DEN FTAD LQSLTNNLCYTYARCTR+VS+VPPAYYAHLAAFRAR+Y+E E+SD                               VR LP +KENVK VMFYC
Sbjct:  953 GIQGTSRPTHYHVLYDENHFTADALQSLTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGESSDGGSTPGSSGQAVAREGP------------VEVRQLPKIKENVKDVMFYC 1058          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO14_ORYSJ (Protein argonaute 14 OS=Oryza sativa subsp. japonica GN=AGO14 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.871e-32
Identity = 71/118 (60.17%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 354
            GIQGTSRP HYHVL DEN+F+AD LQ LT NLCYTYARCTRSVS+VPPAYYAHLAAFRAR+Y EP   D                              AVR LP +KENVK VMFYC
Sbjct:  946 GIQGTSRPTHYHVLHDENRFSADQLQMLTYNLCYTYARCTRSVSVVPPAYYAHLAAFRARYYDEPPAMDGASSVGSGGNQAAAGGQP-----------PAVRRLPQIKENVKDVMFYC 1052          
The following BLAST results are available for this feature:
BLAST of CX289055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AGO1_ARATH5.046e-4476.27Protein argonaute OS=Arabidopsis thaliana GN=AGO1 ... [more]
AGO1A_ORYSJ1.623e-4273.73Protein argonaute 1A OS=Oryza sativa subsp. japoni... [more]
AGO1B_ORYSJ2.769e-4273.73Protein argonaute 1B OS=Oryza sativa subsp. japoni... [more]
AGO1C_ORYSJ1.163e-4070.34Protein argonaute 1C OS=Oryza sativa subsp. japoni... [more]
PINH_ARATH4.888e-3967.80Protein PINHEAD OS=Arabidopsis thaliana GN=At5g438... [more]
AGO1D_ORYSJ6.383e-3967.80Protein argonaute 1D OS=Oryza sativa subsp. japoni... [more]
PNH1_ORYSJ8.337e-3966.10Protein argonaute PNH1 OS=Oryza sativa subsp. japo... [more]
AGOL_ARATH9.539e-3563.56Argonaute-like protein At2g27880 OS=Arabidopsis th... [more]
MEL1_ORYSJ3.625e-3461.86Protein argonaute MEL1 OS=Oryza sativa subsp. japo... [more]
AGO14_ORYSJ9.871e-3260.17Protein argonaute 14 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC02008E12SK IF1 Citrus clementina cDNA clone C02008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289055 ID=CX289055; Name=CX289055; organism=Citrus clementina; type=EST; length=506bp
GGAATACAGGGTACAAGCCGTCCTGCCCATTACCATGTTCTATGGGATGA
GAACAAGTTTACAGCTGATGGACTACAGTCCCTCACAAACAACCTCTGCT
ACACATATGCTAGGTGCACTCGTTCTGTTTCCATTGTTCCCCCAGCATAC
TATGCCCACCTTGCAGCATTCCGAGCTCGTTTCTATATGGAGCCAGAGAC
ATCAGACAGTGGTTCAATGACCAGTGGAACTATTGGACGTGGAGGCATGG
GTGGAGGGGTCGGTGCAAGGAGCACACGTGGACCTGGAGTTGGTGCTGCT
GTCAGACCCCTTCCTGCCCTGAAGGAGAATGTCAAGCGGGTTATGTTTTA
CTGTTAGGGTTGCCTTTCCATGAGATAAGAATTCGACATTTGCCCTGATG
AGCCAAGGATGTCAAGATTTAGATCTATTTTGAGAACTCCATAGATGGTT
TGCCTTCCAGTGTATTGCATGCGATACTTGTCTGTAATGGATGCCAGTGA
TATTTT
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