CX289056

Overview
NameCX289056
Unique NameCX289056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_MAIZE (1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic OS=Zea mays GN=SBE1 PE=1 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 3.603e-98
Identity = 163/189 (86.24%), Postives = 177/189 (93.65%), Query Frame = 2
Query:    5 MAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIV 571
            MA+ADKWI+LLK+ DE WKMG IVHT+TNRRWLEKCV YAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTP IDRGIALHKMIRL+TMGLGGE YLNFMGNEFGHPEWIDFPRG QRLP+G+F+PGNN SYDKCRRRFDLGDADYLRY GMQEFD+AMQHLE+KY FMTS+HQY+SRK + D+VIV
Sbjct:  527 MAVADKWIDLLKQSDETWKMGDIVHTLTNRRWLEKCVTYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPTIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGPQRLPSGKFIPGNNNSYDKCRRRFDLGDADYLRYHGMQEFDQAMQHLEQKYEFMTSDHQYISRKHEEDKVIV 715          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_HUMAN (1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 4.445e-64
Identity = 118/189 (62.43%), Postives = 143/189 (75.66%), Query Frame = 2
Query:    5 MAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVI 568
            MAI DKWI+LLK+ +DEDW MG IV+T+TNRR+LEKC+AYAESHDQALVGDK++AFWLMD +MY  M++  P TP IDRGI LHKMIRL+T GLGGE YLNFMGNEFGHPEW+DFPR            GNN SY   RR+F L D D LRY+ +  FDR M  LEE+YG++ +   YVS K +G+++I
Sbjct:  437 MAIPDKWIQLLKEFKDEDWNMGDIVYTLTNRRYLEKCIAYAESHDQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMGNEFGHPEWLDFPR-----------KGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAPQAYVSEKHEGNKII 614          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_MOUSE (1,4-alpha-glucan-branching enzyme OS=Mus musculus GN=Gbe1 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 6.418e-63
Identity = 118/189 (62.43%), Postives = 142/189 (75.13%), Query Frame = 2
Query:    5 MAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVI 568
            MAI DKWI+LLK+ +DEDW MG IV+T+TNRR+LEKCVAYAESHDQALVGDKT+AFWLMD +MY  M++  P TP IDRGI LHKMIRL+T GLGGE YLNFMGNEFGHPEW+DFPR            GNN SY   RR+F+L D D LRY+ +  FDR M  LEE+ G++++   YVS K + ++ I
Sbjct:  437 MAIPDKWIQLLKEFKDEDWNMGNIVYTLTNRRYLEKCVAYAESHDQALVGDKTLAFWLMDAEMYTNMSVLAPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMGNEFGHPEWLDFPR-----------KGNNESYHYARRQFNLTDDDLLRYKFLNNFDRDMNRLEERCGWLSAPQAYVSEKHEANKTI 614          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_FELCA (1,4-alpha-glucan-branching enzyme OS=Felis catus GN=GBE1 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.439e-62
Identity = 116/189 (61.38%), Postives = 142/189 (75.13%), Query Frame = 2
Query:    5 MAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVI 568
            MAI DKWI+LLK+ +DEDW MG IV+T+TNRR+LEKC+AYAESHDQALVGDKT+AFWLMD +MY  M++  P TP IDRGI LHKMIRL+T  LGGE YLNFMGNEFGHPEW+DFPR            GNN SY   RR+F L D D LRY+ +  FDR M  LEE+ G++++   +VS K +G+++I
Sbjct:  434 MAIPDKWIQLLKEFKDEDWNMGNIVYTLTNRRYLEKCIAYAESHDQALVGDKTLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHALGGEGYLNFMGNEFGHPEWLDFPR-----------KGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNKLEERCGWLSAPQAFVSEKHEGNKII 611          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_SOLTU (1,4-alpha-glucan-branching enzyme OS=Solanum tuberosum GN=SBE1 PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 3.522e-61
Identity = 113/190 (59.47%), Postives = 140/190 (73.68%), Query Frame = 2
Query:    5 MAIADKWIELLK-KRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIV 571
            MAI DKWI+ LK K DEDW M  +  ++TNRR+ EKC+AYAESHDQ++VGDKTIAF LMDK+MY  M+    ++P +DRGIALHKMI   TM LGGE YLNFMGNEFGHPEWIDFPR            GNN+SYDKCRR+++L D+++LRY+ M  FDRAM  L+EK+ F+ S  Q VS  D  ++V+V
Sbjct:  509 MAIPDKWIDYLKNKNDEDWSMKEVTSSLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYSGMSCLTDASPVVDRGIALHKMIHFFTMALGGEGYLNFMGNEFGHPEWIDFPR-----------EGNNWSYDKCRRQWNLADSEHLRYKFMNAFDRAMNSLDEKFSFLASGKQIVSSMDDDNKVVV 687          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_HORSE (1,4-alpha-glucan-branching enzyme OS=Equus caballus GN=GBE1 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 3.522e-61
Identity = 115/189 (60.85%), Postives = 141/189 (74.60%), Query Frame = 2
Query:    5 MAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVI 568
            MAI DKWI+L+K+ +DEDW MG IV+T+TNRR LEKC+AYAESHDQALVGDK++AFWLMD +MY  M++  P TP IDRGI LHKMIRL+T  LGGE YLNFMGNEFGHPEW+DFPR            GNN SY   RR+F L D D LRY+ +  FDR M  LEE+ G++++   +VS K +G++VI
Sbjct:  434 MAIPDKWIQLVKEFKDEDWNMGNIVYTLTNRRHLEKCIAYAESHDQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHALGGEGYLNFMGNEFGHPEWLDFPR-----------KGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNKLEERCGWLSAPQAFVSEKHEGNKVI 611          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_ORYSJ (1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SBE1 PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 3.894e-60
Identity = 113/190 (59.47%), Postives = 141/190 (74.21%), Query Frame = 2
Query:    5 MAIADKWIELLK-KRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIV 571
            MAI D+WI+ LK K D  W M  IV T+TNRR+ EKC+AYAESHDQ++VGDKTIAF LMDK+MY  M+  +P++P I+RGIAL KMI  +TM LGG+ YLNFMGNEFGHPEWIDFPR            GNN+SYDKCRR++ L D D+LRY+ M  FD+AM  LEE++ F++S  Q VS  ++ D+VIV
Sbjct:  489 MAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPR-----------EGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIV 667          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_DEBHA (1,4-alpha-glucan-branching enzyme OS=Debaryomyces hansenii GN=GLC3 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.086e-60
Identity = 114/190 (60.00%), Postives = 138/190 (72.63%), Query Frame = 2
Query:    5 MAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIV 571
            MAI D WI+++K   DE+W MG++VHT+TNRR  E+C++Y ESHDQALVGDKTIAFWLMDK+MY  M+   P TP IDRGIALHKMIRL+T  LGGE YLNF GNEFGHPEW+DFPR            GN  SY   RR+F+L + D LRY+ +  FD AMQHL+ KYG + S   YVS K++ D+VIV
Sbjct:  439 MAIPDMWIKIIKHLSDEEWDMGSLVHTLTNRRHGERCISYCESHDQALVGDKTIAFWLMDKEMYTNMSTLTPFTPVIDRGIALHKMIRLITFSLGGEGYLNFEGNEFGHPEWLDFPR-----------KGNGESYAYARRQFNLIEDDLLRYKFLFAFDGAMQHLDTKYGILLSSQAYVSLKNENDKVIV 617          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_CRYNE (1,4-alpha-glucan-branching enzyme OS=Cryptococcus neoformans GN=GLC3 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59
Identity = 116/190 (61.05%), Postives = 138/190 (72.63%), Query Frame = 2
Query:    5 MAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIV 571
            MAI D WI+LLK+  D+ W+MG IVH +TNRR LEK VAYAESHDQALVGDKT+AFWLMDK+MYDFM+   P TP IDRG+ALHKMIR +   LGGEAYLNF GNEFGHPEW+DFPR            GN  S+   RR+F+L D   LRY+ + EFD AM  LE+KY ++ S   YVS K +GD++IV
Sbjct:  422 MAIPDMWIKLLKEYTDDQWEMGQIVHNLTNRRHLEKSVAYAESHDQALVGDKTLAFWLMDKEMYDFMSDLSPLTPIIDRGLALHKMIRFIVHTLGGEAYLNFEGNEFGHPEWMDFPR-----------EGNGNSFAHARRQFNLVDDKLLRYKYLYEFDVAMNWLEDKYKWLNSPQAYVSLKHEGDKMIV 600          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_YARLI (1,4-alpha-glucan-branching enzyme OS=Yarrowia lipolytica GN=GLC3 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.645e-58
Identity = 111/190 (58.42%), Postives = 138/190 (72.63%), Query Frame = 2
Query:    5 MAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIV 571
            MAI D WI+L+K+ RDEDW MG IV T+TNRR  EK +AYAESHDQALVGDKT+AFWLMDK+MY  M++     P IDRGIALHKMIRL+T  LGGE YLNF GNEFGHPEW+DFPR            GN  S+  CRR++ + D   LRY+ + EFD AMQH  + YG+++++  YVS K++ D+V+V
Sbjct:  423 MAIPDMWIKLVKETRDEDWDMGNIVFTLTNRRHREKTIAYAESHDQALVGDKTLAFWLMDKEMYTSMSVLSDPNPIIDRGIALHKMIRLITHSLGGEGYLNFEGNEFGHPEWLDFPR-----------EGNGSSFHYCRRQWPVVDDKLLRYQHLNEFDAAMQHRGDHYGWLSADQAYVSLKNEDDKVVV 601          
The following BLAST results are available for this feature:
BLAST of CX289056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GLGB_MAIZE3.603e-9886.241,4-alpha-glucan-branching enzyme 2, chloroplastic... [more]
GLGB_HUMAN4.445e-6462.431,4-alpha-glucan-branching enzyme OS=Homo sapiens ... [more]
GLGB_MOUSE6.418e-6362.431,4-alpha-glucan-branching enzyme OS=Mus musculus ... [more]
GLGB_FELCA2.439e-6261.381,4-alpha-glucan-branching enzyme OS=Felis catus G... [more]
GLGB_SOLTU3.522e-6159.471,4-alpha-glucan-branching enzyme OS=Solanum tuber... [more]
GLGB_HORSE3.522e-6160.851,4-alpha-glucan-branching enzyme OS=Equus caballu... [more]
GLGB_ORYSJ3.894e-6059.471,4-alpha-glucan-branching enzyme, chloroplastic/a... [more]
GLGB_DEBHA5.086e-6060.001,4-alpha-glucan-branching enzyme OS=Debaryomyces ... [more]
GLGB_CRYNE3.296e-5961.051,4-alpha-glucan-branching enzyme OS=Cryptococcus ... [more]
GLGB_YARLI3.645e-5858.421,4-alpha-glucan-branching enzyme OS=Yarrowia lipo... [more]

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Properties
Property NameValue
Genbank descriptionC02008F01SK IF1 Citrus clementina cDNA clone C02008F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289056 ID=CX289056; Name=CX289056; organism=Citrus clementina; type=EST; length=573bp
GCAAATGGCCATCGCTGATAAATGGATTGAGCTCCTTAAGAAAAGGGATG
AAGACTGGAAAATGGGTGCAATCGTTCACACAATGACCAACAGGAGGTGG
TTGGAAAAGTGTGTTGCTTATGCTGAAAGTCATGACCAAGCTCTTGTTGG
TGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGATTTTA
TGGCTCTGGACAGACCGTCAACTCCCCGCATAGATCGTGGAATAGCATTA
CACAAGATGATCAGGCTCGTTACCATGGGATTAGGTGGAGAAGCATACTT
GAACTTTATGGGCAATGAATTTGGACATCCTGAGTGGATTGATTTTCCAA
GGGGCGATCAGCGTCTTCCTAATGGTCAATTCGTTCCTGGGAACAATTTC
AGCTATGACAAGTGCCGGCGTAGGTTTGATCTAGGGGATGCTGATTATCT
GAGATATCGTGGAATGCAAGAATTTGATCGGGCAATGCAGCATCTTGAGG
AGAAGTACGGGTTCATGACTTCTGAGCACCAATATGTGTCACGGAAGGAC
CAGGGAGACAGGGTAATAGTCTT
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