CX289066

Overview
NameCX289066
Unique NameCX289066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289066_ssr55 microsatellite CX289066_ssr55:55..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX289066 vs. ExPASy Swiss-Prot
Match: ENL3_ARATH (Early nodulin-like protein 3 OS=Arabidopsis thaliana GN=At5g25090 PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 5.088e-44
Identity = 83/143 (58.04%), Postives = 111/143 (77.62%), Query Frame = 3
Query:  111 ARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRRRYTG-------ISPAPAPMEFDGPAVAPTSSAAS 518
            +++I+VGGKT SWKIPSS S+SLN+WAE  RF+VGD+LVWKYD  +DSVLQVTK+AY++CNT++P A Y +G+TKVKL +SGP++FISG+K +C +G+KL +VVMSSR  +TG        SPAP+P     P VAP S  ++
Sbjct:   23 SKEIIVGGKTSSWKIPSSPSESLNKWAESLRFRVGDTLVWKYDEEKDSVLQVTKDAYINCNTTNPAANYSNGDTKVKLERSGPYFFISGSKSNCVEGEKLHIVVMSSRGGHTGGFFTGSSPSPAPSPALLGAPTVAPASGGSA 165          
BLAST of CX289066 vs. ExPASy Swiss-Prot
Match: ENL1_ARATH (Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 4.762e-42
Identity = 82/139 (58.99%), Postives = 109/139 (78.42%), Query Frame = 3
Query:  111 ARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRRRYTGISPAPAPMEF-DGPAVAPTSSAASFK 524
            A ++ VGGK+  WKIP S S S  +WA+K RF+VGD +V++Y++ +DSVL+VTKEAY SCNT++P+A Y DG TKVKL++SGPFYFISG  G CEKGQKL +VV+S   R++ ISPAP+P+EF DGPA+AP   + S +
Sbjct:   28 ANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEAYNSCNTTNPLANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVVISP--RHSVISPAPSPVEFEDGPALAPAPISGSVR 164          
BLAST of CX289066 vs. ExPASy Swiss-Prot
Match: NO552_SOYBN (Early nodulin-55-2 OS=Glycine max GN=ENOD55-2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.634e-21
Identity = 54/136 (39.71%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  108 EARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPV-AEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRR-RYTGISPAPAPMEFDGPAVAPTSS 509
            EA   +VGG   SWK P S+ DSL+ WA   RF++GD+L++KY+   +SV +  +  Y  CNT       +  GNTKV L K G  +FISG +  C+ G KL V+V+SS + +   +SP+P+P       ++P+ S
Sbjct:   25 EAEKYVVGGSEKSWKFPLSKPDSLSHWANSHRFKIGDTLIFKYEKRTESVHEGNETDYEGCNTVGKYHIVFNGGNTKVMLTKPGFRHFISGNQSHCQMGLKLAVLVISSNKTKKNLLSPSPSPSPPPSSLLSPSPS 160          
BLAST of CX289066 vs. ExPASy Swiss-Prot
Match: ENL2_ARATH (Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.348e-20
Identity = 58/141 (41.13%), Postives = 85/141 (60.28%), Query Frame = 3
Query:  111 ARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRRRYTGISP-APAPMEFDGPAVAPTSSAASFKAS 530
            AR   VGG + +W   ++  ++   W+ K RF V D+L + Y    DSVL+V K  Y +CNT +P+    DG++++ L++ GPFYFISG + +C+KGQKL VVV+S+R   T  SP A AP      ++ P   A S K+S
Sbjct:   28 ARKFNVGG-SGAWV--TNPPENYESWSGKNRFLVHDTLYFSYAKGADSVLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKLNVVVISARIPSTAQSPHAAAPGSSTPGSMTPPGGAHSPKSS 165          
BLAST of CX289066 vs. ExPASy Swiss-Prot
Match: NO16_MEDTR (Early nodulin-16 OS=Medicago truncatula GN=ENOD16 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 3
Query:  108 EARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMS 428
            E+ D L+G   +SWK+P     +  +WA    F VGD+++++YD   +SV +V +  Y+ C+T+    E+ DGNTKV L+K G ++FISGTK  C+ G KL VVV +
Sbjct:   23 ESTDYLIGDSHNSWKVPLPSRRAFARWASAHEFTVGDTILFEYDNETESVHEVNEHDYIMCHTNGEHVEHHDGNTKVVLDKIGVYHFISGTKRHCKMGLKLAVVVQN 129          
BLAST of CX289066 vs. ExPASy Swiss-Prot
Match: NO20_MEDTR (Early nodulin-20 OS=Medicago truncatula GN=ENOD20 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 3
Query:  108 EARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVM 425
            E+ D LVG   +SWK P     +L +WA   +F VGD++ ++Y+   +SV +V +E Y  C       ++ DGNT V L K+G  +FISG K  C  G KL VVVM
Sbjct:   23 ESTDYLVGDSENSWKFPLPTRHALTRWASNYQFIVGDTITFQYNNKTESVHEVEEEDYDRCGIRGEHVDHYDGNTMVVLKKTGIHHFISGKKRHCRLGLKLAVVVM 128          
BLAST of CX289066 vs. ExPASy Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  183 QWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVV 422
            +WA   +F VGDSL++ Y+    +VLQV +E + SCN+SSP A Y  G   + L + G FYF+ G  G C+ GQK+ + V
Sbjct:   22 KWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 101          
BLAST of CX289066 vs. ExPASy Swiss-Prot
Match: STEL_RHUVE (Stellacyanin OS=Rhus vernicifera PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 36/98 (36.73%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  132 GKTDSWKIPS-SQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVV 422
            G +  WK+P     D   +WA    F +GD LV+KYD    +V +VT++ Y SCN ++P+A Y  G+ ++ L   G  Y+I G    C+ GQK+ + V
Sbjct:    6 GDSAGWKVPFFGDVDYDWKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQSCNDTTPIASYNTGBBRINLKTVGQKYYICGVPKHCDLGQKVHINV 103          
BLAST of CX289066 vs. ExPASy Swiss-Prot
Match: NO551_SOYBN (Early nodulin-55-1 (Fragment) OS=Glycine max GN=ENOD55-1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 42/103 (40.78%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  231 KYDATRDSVLQVTKEAYLSCNT-SSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRRRYTGI------SPAPAPMEFDGPAVAPTSSAAS 518
            KYD   +SV +V +  Y  CNT       + DGNTKV L KSG  +FISG +  C+ G KL+VVVMS+  +   I      SP+P+P     P+ +P+ S +S
Sbjct:    1 KYDERTESVHEVNETDYEQCNTVGKEHVLFNDGNTKVMLTKSGFRHFISGNQSHCQMGLKLMVVVMSNNTKKKLIHSPSPSSPSPSPSPSPSPSPSPSPSLSS 103          
The following BLAST results are available for this feature:
BLAST of CX289066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ENL3_ARATH5.088e-4458.04Early nodulin-like protein 3 OS=Arabidopsis thalia... [more]
ENL1_ARATH4.762e-4258.99Early nodulin-like protein 1 OS=Arabidopsis thalia... [more]
NO552_SOYBN4.634e-2139.71Early nodulin-55-2 OS=Glycine max GN=ENOD55-2 PE=2... [more]
ENL2_ARATH1.348e-2041.13Early nodulin-like protein 2 OS=Arabidopsis thalia... [more]
NO16_MEDTR6.692e-2042.06Early nodulin-16 OS=Medicago truncatula GN=ENOD16 ... [more]
NO20_MEDTR2.015e-1641.51Early nodulin-20 OS=Medicago truncatula GN=ENOD20 ... [more]
MAVI_CUCPE3.217e-1443.75Mavicyanin OS=Cucurbita pepo PE=1 SV=1[more]
STEL_RHUVE7.923e-1336.73Stellacyanin OS=Rhus vernicifera PE=1 SV=1[more]
NO551_SOYBN8.760e-1240.78Early nodulin-55-1 (Fragment) OS=Glycine max GN=EN... [more]
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Properties
Property NameValue
Genbank descriptionC02008G01SK IF1 Citrus clementina cDNA clone C02008G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289066 ID=CX289066; Name=CX289066; organism=Citrus clementina; type=EST; length=577bp
ACAAACACTGTCATCTTTTCAGTTTCTCAATGGCTGGCCTTTCAAGAACC
CTAGCTTCTTCTTCTTTGGTGCTCACATCACTTGTTCTCTTCAGCATCAG
CTTCTGCGAAGCAAGAGACATCTTGGTTGGTGGCAAAACAGATTCTTGGA
AAATCCCTTCTTCACAATCTGATTCCCTCAATCAATGGGCTGAAAAAACT
CGCTTCCAAGTCGGGGATTCTCTAGTGTGGAAATATGATGCCACCAGAGA
CTCAGTGCTGCAAGTGACAAAAGAAGCTTACCTCAGCTGCAACACAAGCA
GCCCAGTTGCTGAGTACAGGGATGGCAACACCAAGGTGAAGCTGAACAAA
TCTGGGCCATTCTACTTCATCAGTGGAACCAAGGGAAGCTGTGAGAAAGG
CCAGAAGTTGATTGTTGTCGTGATGTCTTCGAGGAGAAGGTACACTGGCA
TTTCTCCGGCACCGGCTCCGATGGAGTTCGATGGTCCGGCCGTGGCTCCT
ACAAGCAGTGCTGCAAGCTTTAAGGCTAGTTTGGTGCTGGCACTTGGAGG
TCTTTTGGCTTGGGTTCTGTTTTAATT
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