CX289067

Overview
NameCX289067
Unique NameCX289067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289067 vs. ExPASy Swiss-Prot
Match: XYNB_PRUPE (Putative beta-D-xylosidase (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.556e-72
Identity = 129/195 (66.15%), Postives = 150/195 (76.92%), Query Frame = 1
Query:    1 GRANPGGKLPMTWYPQDYVARLPMTDMRMRA--GRGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDVKNTGEMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSI 579
            G ANPGGKLPMTWYPQ+YV  LPMTDM MRA   RGYPGRTYRFY GPVVFPFG G+SYTTFAH L+  P   SVP+ TSL A  N+T+ S  +RV+H +CN    L +HVDVKNTG M GTHTLLVF  PP G W+ +KQL+GF K+H+  G+ + VRI +HVCKHLSVVD+FGIRRIP+GEH L IGDL H +
Sbjct:  257 GTANPGGKLPMTWYPQNYVTHLPMTDMAMRADPARGYPGRTYRFYIGPVVFPFGLGLSYTTFAHNLAHGPTLVSVPL-TSLKATANSTMLSKTVRVSHPDCNALSPLDVHVDVKNTGSMDGTHTLLVFTSPPDGKWASSKQLMGFHKIHIATGSEKRVRIAVHVCKHLSVVDRFGIRRIPLGEHKLQIGDLSHHV 450          
BLAST of CX289067 vs. ExPASy Swiss-Prot
Match: BXL1_ARATH (Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 6.764e-68
Identity = 125/197 (63.45%), Postives = 149/197 (75.63%), Query Frame = 1
Query:    1 GRANPGGKLPMTWYPQDYVARLPMTDMRMRAGRGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAP-NQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDVKNTGEMAGTHTLLVFAKPPAG---NWSPNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSI 579
            G ANPGGKLPMTWYPQDYVA++PMT M MRA   YPGRTYRFYKGPVVFPFG G+SYTTF H+L+K+P  Q SV ++    A      SS++I+V+HTNCN    + LHV+V NTGE  GTHT+ VFA+PP         NKQLI F+KVHV AGA Q+V++D+  CKHL VVD++G RRIPMGEH LHIGDLKH+I
Sbjct:  572 GAANPGGKLPMTWYPQDYVAKVPMTVMAMRASGNYPGRTYRFYKGPVVFPFGFGLSYTTFTHSLAKSPLAQLSVSLSNLNSANTILNSSSHSIKVSHTNCNSFPKMPLHVEVSNTGEFDGTHTVFVFAEPPINGIKGLGVNKQLIAFEKVHVMAGAKQTVQVDVDACKHLGVVDEYGKRRIPMGEHKLHIGDLKHTI 768          
BLAST of CX289067 vs. ExPASy Swiss-Prot
Match: BXL2_ARATH (Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 1.906e-62
Identity = 111/195 (56.92%), Postives = 142/195 (72.82%), Query Frame = 1
Query:    1 GRANPGGKLPMTWYPQDYVARLPMTDMRMRA--GRGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDVKNTGEMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSI 579
            G ANPGGKLPMTWYPQDY+  LPMT+M MR    +  PGRTYRFY GPVV+PFGHG+SYT F H ++ AP    +PIA      +N T+S  +IRV H  C D +SLG+HV+V N G   GTHT+LVF+ PP G W+P KQL+ F++VHV  G  + V+++IHVCK+LSVVD+ G RRIP+G+H +HIGD  H++
Sbjct:  568 GSANPGGKLPMTWYPQDYLTNLPMTEMSMRPVHSKRIPGRTYRFYDGPVVYPFGHGLSYTRFTHNIADAPKV--IPIAVR---GRNGTVSGKSIRVTHARC-DRLSLGVHVEVTNVGSRDGTHTMLVFSAPPGGEWAPKKQLVAFERVHVAVGEKKRVQVNIHVCKYLSVVDRAGNRRIPIGDHGIHIGDESHTV 756          
BLAST of CX289067 vs. ExPASy Swiss-Prot
Match: BXL4_ARATH (Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.597e-47
Identity = 95/200 (47.50%), Postives = 129/200 (64.50%), Query Frame = 1
Query:    1 GRANPGGKLPMTWYPQDYVARLPMTDMRMRAGR--GYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLG-----LHVDVKNTGEMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSI 579
            GR NP GKLPMTWYPQ YV ++PMT M MR  +  GYPGRTYRFY G  V+ FG G+SYT F+HTL KAP+  S+ +  +     +   S +AI     +C +A+S G     +H+ V+N G+  G HT+ +F  PPA + SP K L+GF+K+ +       VR  + +CK LSVVD+ G R+I +G+H LH+GDLKHS+
Sbjct:  584 GRYNPSGKLPMTWYPQSYVEKVPMTIMNMRPDKASGYPGRTYRFYTGETVYAFGDGLSYTKFSHTLVKAPSLVSLGLEENHVCRSSECQSLDAIG---PHCENAVSGGGSAFEVHIKVRNGGDREGIHTVFLFTTPPAIHGSPRKHLVGFEKIRLGKREEAVVRFKVEICKDLSVVDEIGKRKIGLGKHLLHVGDLKHSL 780          
BLAST of CX289067 vs. ExPASy Swiss-Prot
Match: BXL3_ARATH (Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.531e-43
Identity = 89/199 (44.72%), Postives = 126/199 (63.32%), Query Frame = 1
Query:    1 GRANPGGKLPMTWYPQDYVARLPMTDMRMRA--GRGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLG----LHVDVKNTGEMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSI 579
            GR NP G LPMTWYPQ YV ++PM++M MR    +GYPGR+YRFY G  V+ F   ++YT F H L KAP   S+ +  +     +   S +AI     +C +A+  G    +H++VKNTG+ AG+HT+ +F   P  + SP KQL+GF+K+ +       VR +++VCK LSVVD+ G R+I +G H LH+G LKHS+
Sbjct:  574 GRHNPSGNLPMTWYPQSYVEKVPMSNMNMRPDKSKGYPGRSYRFYTGETVYAFADALTYTKFDHQLIKAPRLVSLSLDENHPCRSSECQSLDAIG---PHCENAVEGGSDFEVHLNVKNTGDRAGSHTVFLFTTSPQVHGSPIKQLLGFEKIRLGKSEEAVVRFNVNVCKDLSVVDETGKRKIALGHHLLHVGSLKHSL 769          
BLAST of CX289067 vs. ExPASy Swiss-Prot
Match: BXL6_ARATH (Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.347e-36
Identity = 83/202 (41.09%), Postives = 117/202 (57.92%), Query Frame = 1
Query:    1 GRANPGGKLPMTWYPQDYVARLPMTDMRMRAG--RGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVP-IATSLYAFKNTTISSNAIRVAH-----TNCNDAMSLGLHVDVKNTGEMAGTHTLLVFAK-PPAGNWSPNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSI 579
            G  NPGG+LP TWYP+ +   + M+DM MRA   RGYPGRTYRFY GP V+ FG G+SYT F + +  AP + S+  +     + K        +R         N  +++   + V V NTGE+ G+H +++F+K PP  +  P KQLIG+ +VHV +  +      I  CK LSV +  G R IP+G H L +GDL+HS+
Sbjct:  588 GDFNPGGRLPTTWYPESFTD-VAMSDMHMRANSSRGYPGRTYRFYTGPQVYSFGTGLSYTKFEYKILSAPIRLSLSELLPQQSSHKKQLQHGEELRYLQLDDVIVNSCESLRFNVRVHVSNTGEIDGSHVVMLFSKMPPVLSGVPEKQLIGYDRVHVRSNEMMETVFVIDPCKQLSVANDVGKRVIPLGSHVLFLGDLQHSL 788          
BLAST of CX289067 vs. ExPASy Swiss-Prot
Match: BXL7_ARATH (Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.288e-34
Identity = 78/198 (39.39%), Postives = 118/198 (59.60%), Query Frame = 1
Query:    1 GRANPGGKLPMTWYPQDYVARLPMTDMRMRAGRGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCN-------DAMSLGLHVDVKNTGEMAGTHTLLVFAKPPAGNWS---PNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIGD 564
            G  NPGG+LP+TWYPQ +V  + MTDMRMR+  GYPGRTY+FYKGP V+ FGHG+SY+ +++       +F     T+LY    +   +N+  V +T  +       D     + V+V+N GEMAG H +L+FA+   G        KQL+GFK + ++ G    +  +I +C+HLS  ++FG+  +  G++ L +GD
Sbjct:  570 GDHNPGGRLPVTWYPQSFV-NIQMTDMRMRSATGYPGRTYKFYKGPKVYEFGHGLSYSAYSY-------RFKTLAETNLY-LNQSKAQTNSDSVRYTLVSEMGKEGCDVAKTKVTVEVENQGEMAGKHPVLMFARHERGGEDGKRAEKQLVGFKSIVLSNGEKAEMEFEIGLCEHLSRANEFGVMVLEEGKYFLTVGD 758          
BLAST of CX289067 vs. ExPASy Swiss-Prot
Match: BXL5_ARATH (Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 5.410e-33
Identity = 74/195 (37.95%), Postives = 112/195 (57.44%), Query Frame = 1
Query:    1 GRANPGGKLPMTWYPQDYVARLPMTDMRMRAGR--GYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDVKNTGEMAGTHTLLVFAKPP------AGNWSPNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIG 561
            G  NP G+LP TWYPQ++  ++ MTDM MR     G+PGR+YRFY G  ++ FG+G+SY++F+  +  AP+   +     +   K T++      ++  NC+D + + + + VKN G  +G+H +LVF KPP       G   P  QL+GF++V V     +   +D  VCK LS+VD  G R++  G H L IG
Sbjct:  570 GDYNPSGRLPETWYPQEFADKVAMTDMNMRPNSTSGFPGRSYRFYTGKPIYKFGYGLSYSSFSTFVLSAPSIIHIKTNPIMNLNKTTSVD-----ISTVNCHD-LKIRIVIGVKNHGLRSGSHVVLVFWKPPKCSKSLVGGGVPLTQLVGFERVEVGRSMTEKFTVDFDVCKALSLVDTHGKRKLVTGHHKLVIG 758          
The following BLAST results are available for this feature:
BLAST of CX289067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
XYNB_PRUPE1.556e-7266.15Putative beta-D-xylosidase (Fragment) OS=Prunus pe... [more]
BXL1_ARATH6.764e-6863.45Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL... [more]
BXL2_ARATH1.906e-6256.92Probable beta-D-xylosidase 2 OS=Arabidopsis thalia... [more]
BXL4_ARATH8.597e-4747.50Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL... [more]
BXL3_ARATH7.531e-4344.72Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL... [more]
BXL6_ARATH2.347e-3641.09Probable beta-D-xylosidase 6 OS=Arabidopsis thalia... [more]
BXL7_ARATH1.288e-3439.39Probable beta-D-xylosidase 7 OS=Arabidopsis thalia... [more]
BXL5_ARATH5.410e-3337.95Probable beta-D-xylosidase 5 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC02008G02SK IF1 Citrus clementina cDNA clone C02008G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289067 ID=CX289067; Name=CX289067; organism=Citrus clementina; type=EST; length=579bp
GGAAGAGCTAATCCAGGAGGAAAGCTGCCAATGACTTGGTACCCTCAGGA
TTACGTGGCTAGACTGCCAATGACAGACATGAGAATGCGAGCAGGAAGAG
GCTATCCTGGAAGAACTTACAGATTCTATAAAGGCCCAGTTGTATTTCCA
TTTGGTCACGGAATGAGCTACACAACATTTGCACACACATTATCAAAGGC
ACCAAATCAATTTTCTGTACCCATTGCAACAAGTCTCTACGCCTTCAAAA
ACACTACCATATCAAGCAATGCAATTAGGGTAGCGCATACAAATTGCAAT
GATGCAATGTCATTAGGTTTACACGTTGACGTCAAAAACACCGGCGAAAT
GGCCGGGACTCATACGCTTCTGGTTTTCGCGAAACCCCCGGCTGGAAATT
GGTCTCCGAATAAGCAACTAATTGGTTTCAAGAAAGTTCATGTTACAGCC
GGGGCACTACAAAGTGTTAGGATCGATATTCATGTGTGTAAGCACCTTAG
TGTTGTTGATAAATTCGGAATTCGAAGAATTCCAATGGGTGAACATAGTC
TCCATATTGGAGATCTCAAGCATTCAATC
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