CX289073

Overview
NameCX289073
Unique NameCX289073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289073 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.685e-71
Identity = 134/170 (78.82%), Postives = 151/170 (88.82%), Query Frame = 3
Query:    3 LLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETL 512
            L+EKVQHELL V+A+QLLEKEHSGC ALLRDDKV+DLSRM+RL+ KI RGL+PV+NIFKQHVTAEG ALV+ AED A+N+ A    V   QEQV +RKVIELHDKY+ YV +CFQNHTLFHK+LKEAFE+FCNK VAGSSSAELLATFCDNILKKGGSEKLSDEAIE+TL
Sbjct:  247 LVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVANIFKQHVTAEGNALVQQAEDTATNQVANTASV---QEQVLIRKVIELHDKYMVYVTECFQNHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTL 413          
BLAST of CX289073 vs. ExPASy Swiss-Prot
Match: CUL1_CAEEL (Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.507e-16
Identity = 59/169 (34.91%), Postives = 92/169 (54.44%), Query Frame = 3
Query:   42 ANQL--LEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEG-TALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAG---------SSSAELLATFCDNILKKGGSEKLSDEAIEETL 512
            +NQL  L++   G   LL D + +DLSRMF+L  ++P GLD +    + H+  EG  AL ++A +AA++ K            ++V+ ++E+H++Y + VN  F+N   F +SL +A   F N              + SAELLA +CD +L+K  S K+ DEA  E L
Sbjct:  298 SNQLDFLQRHFGG---LLVDKRDDDLSRMFKLCDRVPNGLDELRKSLENHIAKEGHQALERVAMEAATDAK------------LYVKTLLEVHERYQSLVNRSFKNEPGFMQSLDKAATSFINNNAVTKRAPPQAQLTKSAELLARYCDQLLRK--SSKMPDEAELEEL 449          
BLAST of CX289073 vs. ExPASy Swiss-Prot
Match: CUL1_PONAB (Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.500e-15
Identity = 61/181 (33.70%), Postives = 89/181 (49.17%), Query Frame = 3
Query:    3 LLEKVQHELLSVYANQLLEKE----HSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGV------AGSSSAELLATFCDNILKKGGSEKLSDEA-IEETL 512
            L E  Q EL       L+EK     H+    LL  DK EDL RM+ L S+I  GL  +  + + H+  +G A ++   +AA N             +++V+ V+++H KY A V   F N   F  +L +A   F N         + S S ELLA +CD++LKK  S K  +EA +E+TL
Sbjct:  279 LHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALN-----------DPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK--SSKNPEEAELEDTL 446          
BLAST of CX289073 vs. ExPASy Swiss-Prot
Match: CUL1_MOUSE (Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.500e-15
Identity = 61/181 (33.70%), Postives = 89/181 (49.17%), Query Frame = 3
Query:    3 LLEKVQHELLSVYANQLLEKE----HSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGV------AGSSSAELLATFCDNILKKGGSEKLSDEA-IEETL 512
            L E  Q EL       L+EK     H+    LL  DK EDL RM+ L S+I  GL  +  + + H+  +G A ++   +AA N             +++V+ V+++H KY A V   F N   F  +L +A   F N         + S S ELLA +CD++LKK  S K  +EA +E+TL
Sbjct:  279 LHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALN-----------DPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK--SSKNPEEAELEDTL 446          
BLAST of CX289073 vs. ExPASy Swiss-Prot
Match: CUL1_HUMAN (Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.500e-15
Identity = 61/181 (33.70%), Postives = 89/181 (49.17%), Query Frame = 3
Query:    3 LLEKVQHELLSVYANQLLEKE----HSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGV------AGSSSAELLATFCDNILKKGGSEKLSDEA-IEETL 512
            L E  Q EL       L+EK     H+    LL  DK EDL RM+ L S+I  GL  +  + + H+  +G A ++   +AA N             +++V+ V+++H KY A V   F N   F  +L +A   F N         + S S ELLA +CD++LKK  S K  +EA +E+TL
Sbjct:  279 LHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALN-----------DPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK--SSKNPEEAELEDTL 446          
BLAST of CX289073 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.219e-14
Identity = 48/170 (28.24%), Postives = 95/170 (55.88%), Query Frame = 3
Query:    3 LLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETL 512
            +++ V+ EL+S +   ++E E+SG   +L++ K EDL+ M++LFS++P GL  +      ++  +G ALV        +++ E ++ V      +++ +++L  ++  ++ + F N  LF +++   FE F N     S S E L+ F D+ LKK G + L+++ +E  L
Sbjct:  260 IVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLACMYKLFSRVPNGLKTMCECMSLYLREQGKALV--------SEEGEGKNPVD-----YIQGLLDLKSRFDRFLQESFSNDRLFKQTIAGDFEYFLN---LNSRSPEYLSLFIDDKLKK-GVKGLTEQEVESIL 412          
BLAST of CX289073 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.219e-14
Identity = 48/170 (28.24%), Postives = 95/170 (55.88%), Query Frame = 3
Query:    3 LLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETL 512
            +++ V+ EL+S +   ++E E+SG   +L++ K EDL+ M++LFS++P GL  +      ++  +G ALV        +++ E ++ V      +++ +++L  ++  ++ + F N  LF +++   FE F N     S S E L+ F D+ LKK G + L+++ +E  L
Sbjct:  260 IVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLACMYKLFSRVPNGLKTMCECMSLYLREQGKALV--------SEEGEGKNPVD-----YIQGLLDLKSRFDRFLQESFSNDRLFKQTIAGDFEYFLN---LNSRSPEYLSLFIDDKLKK-GVKGLTEQEVESIL 412          
BLAST of CX289073 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.219e-14
Identity = 48/170 (28.24%), Postives = 95/170 (55.88%), Query Frame = 3
Query:    3 LLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETL 512
            +++ V+ EL+S +   ++E E+SG   +L++ K EDL+ M++LFS++P GL  +      ++  +G ALV        +++ E ++ V      +++ +++L  ++  ++ + F N  LF +++   FE F N     S S E L+ F D+ LKK G + L+++ +E  L
Sbjct:  260 IVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLACMYKLFSRVPNGLKTMCECMSLYLREQGKALV--------SEEGEGKNPVD-----YIQGLLDLKSRFDRFLQESFSNDRLFKQTIAGDFEYFLN---LNSRSPEYLSLFIDDKLKK-GVKGLTEQEVESIL 412          
BLAST of CX289073 vs. ExPASy Swiss-Prot
Match: CUL3_MOUSE (Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.196e-14
Identity = 48/170 (28.24%), Postives = 95/170 (55.88%), Query Frame = 3
Query:    3 LLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETL 512
            +++ V+ EL+S +   ++E E+SG   +L++ K EDL+ M++LFS++P GL  +      ++  +G ALV        +++ E ++ V      +++ +++L  ++  ++ + F N  LF +++   FE F N     S S E L+ F D+ LKK G + L+++ +E  L
Sbjct:  260 IVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLACMYKLFSRVPNGLKTMCECMSCYLREQGKALV--------SEEGEGKNPVD-----YIQGLLDLKSRFDRFLQESFNNDRLFKQTIAGDFEYFLN---LNSRSPEYLSLFIDDKLKK-GVKGLTEQEVETIL 412          
BLAST of CX289073 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.196e-14
Identity = 48/167 (28.74%), Postives = 86/167 (51.50%), Query Frame = 3
Query:    3 LLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIE 503
            L E  + +L+S +   L++ E+SG  ++L+DDK+EDL RM+ LFS++  GL+ + ++   +V   G  +V   E                +   + + +++L DKY   + +   N   F  S+++AFE F N       S E ++ F D  LKK G + +S+E ++
Sbjct:  255 LKEVCEKQLISNHMRTLIDMENSGLISMLKDDKIEDLKRMYNLFSRVSDGLNLMKDVISSYVKEIGRGIVMDEEKTK-------------ESGTYFQSLLDLKDKYDNLLQNALYNDKQFIHSIQQAFEYFIN---LNPKSPEYISLFIDEKLKK-GLKGVSEEEVD 404          
The following BLAST results are available for this feature:
BLAST of CX289073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CUL1_ARATH1.685e-7178.82Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL1_CAEEL4.507e-1634.91Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 S... [more]
CUL1_PONAB8.500e-1533.70Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1[more]
CUL1_MOUSE8.500e-1533.70Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1[more]
CUL1_HUMAN8.500e-1533.70Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2[more]
CUL3_XENTR4.219e-1428.24Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3B_XENLA4.219e-1428.24Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3A_XENLA4.219e-1428.24Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL3_MOUSE7.196e-1428.24Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1[more]
CUL3_DICDI7.196e-1428.74Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC02008G08SK IF1 Citrus clementina cDNA clone C02008G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289073 ID=CX289073; Name=CX289073; organism=Citrus clementina; type=EST; length=513bp
AGTTACTAGAGAAAGTTCAACATGAGTTATTGTCAGTATATGCAAATCAA
CTGCTTGAGAAAGAGCACTCAGGATGCCATGCATTGCTCAGAGACGACAA
GGTGGAGGATTTGTCAAGAATGTTCAGGCTCTTTTCTAAAATACCCCGAG
GCTTAGATCCTGTTTCGAACATCTTTAAGCAGCATGTTACTGCTGAAGGT
ACAGCCTTGGTGAAACTGGCTGAAGATGCAGCAAGCAATAAGAAGGCAGA
GAAAAGGGATGTGGTCGGCTTACAGGAGCAGGTTTTTGTCAGGAAAGTGA
TTGAGTTGCATGACAAGTACTTAGCATATGTAAATGATTGTTTCCAGAAC
CACACTCTCTTCCATAAGTCTCTTAAGGAGGCTTTTGAGGTCTTCTGCAA
CAAGGGTGTTGCTGGAAGCTCAAGTGCGGAACTCCTGGCCACTTTCTGTG
ATAATATTCTTAAGAAAGGTGGGAGCGAGAAACTTAGTGATGAAGCAATT
GAAGAAACGCTTG
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