CX289074

Overview
NameCX289074
Unique NameCX289074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15184 contig Ccv1_Contig15184:410..964. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289074 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 3.745e-41
Identity = 90/126 (71.43%), Postives = 98/126 (77.78%), Query Frame = 3
Query:  180 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 554
            VYG AASNL AG+NLE  IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN               +SGPNANPLDLFPQGLP+VG G  GAG+LDFLR
Sbjct:  173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPAN---PPAQTQQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLR 294          
BLAST of CX289074 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.090e-40
Identity = 83/125 (66.40%), Postives = 95/125 (76.00%), Query Frame = 3
Query:  180 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 554
            VYG AASNLVAG  LE  +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP  G+ A +              + GPNANPL+LFPQG+P   +G AGAG+LDFLR
Sbjct:  134 VYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAG-AGAGNLDFLR 257          
BLAST of CX289074 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 5.420e-32
Identity = 73/126 (57.94%), Postives = 85/126 (67.46%), Query Frame = 3
Query:  183 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 554
            YG A SNLVAG+NLE  IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ +  V P +  P N   A+               SSGPNA+PLDLFPQ LP+  + AAG G+LD LR
Sbjct:  145 YGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQ----ATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALR 266          
BLAST of CX289074 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 4.748e-28
Identity = 67/127 (52.76%), Postives = 86/127 (67.72%), Query Frame = 3
Query:  183 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 554
            YG AAS LV+G++LE  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV    P A+  G+G A                 S GPN++PLDLFPQ      +G+   G+L+FLR
Sbjct:  135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA------------PVAPASGGPNSSPLDLFPQETV-AAAGSGDLGTLEFLR 248          
BLAST of CX289074 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.403e-26
Identity = 65/126 (51.59%), Postives = 82/126 (65.08%), Query Frame = 3
Query:  183 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGA--GSLDFLR 554
            YG AAS LV+G+++E  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE   + P     G G                   S GPN++PLDLFPQ   +  S AAG   G+L+FLR
Sbjct:  133 YGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGRE---------LTAPPPSGGPNSSPLDLFPQ---EAVSDAAGGDLGTLEFLR 245          
The following BLAST results are available for this feature:
BLAST of CX289074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RD23C_ARATH3.745e-4171.43Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23D_ARATH1.090e-4066.40Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RAD23_ORYSJ5.420e-3257.94Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH4.748e-2852.76Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH3.403e-2651.59Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC02008G10SK IF1 Citrus clementina cDNA clone C02008G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289074 ID=CX289074; Name=CX289074; organism=Citrus clementina; type=EST; length=555bp
GTTCAACTACGTCAACTGCGCCTACAAAGGCTCCCCAGTCAAGTGCCCCA
ACCCCTGCAGTGACCCCAGCAACAGCTCCTCAGACTGCCGTGCCAATCTC
TACAGAGCCTACACCTGCTCCTACTCCTGCTCCTGCTTCTGCTTCTGTGT
CATCAGTTTCTGCTACGTCAGAGTCTGGTGTGTATGGGCATGCTGCATCT
AATCTGGTTGCTGGGAACAACTTGGAGGGAGCAATCCAGCAGATTCTTGA
TATGGGTGGAGGGACTTGGGATAGAGATACTGTTGTTCGTGCTCTTCGAG
CTGCTTATAATAATCCTGAGAGGGCTGTTGAATATTTATATTCTGGTATA
CCTGAGCAAGCTGAAGTTCAACCTGTGGCCCGCGCCCCTGGTAATGGACA
AGCTGCTAACTCTCCAACTCAGATGCCACAGCCAACCCAACCGGCACCCG
TTACTTCTAGTGGGCCAAATGCAAATCCTTTGGACCTCTTTCCTCAGGGC
CTTCCTGACGTGGGTTCAGGTGCAGCTGGCGCTGGCAGTCTTGACTTTTT
ACGTA
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