CX289074
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX289074 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 167.548 bits (423), Expect = 3.745e-41 Identity = 90/126 (71.43%), Postives = 98/126 (77.78%), Query Frame = 3 Query: 180 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 554 VYG AASNL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN +SGPNANPLDLFPQGLP+VG G GAG+LDFLR Sbjct: 173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPAN---PPAQTQQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLR 294
BLAST of CX289074 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 166.007 bits (419), Expect = 1.090e-40 Identity = 83/125 (66.40%), Postives = 95/125 (76.00%), Query Frame = 3 Query: 180 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 554 VYG AASNLVAG LE +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A + + GPNANPL+LFPQG+P +G AGAG+LDFLR Sbjct: 134 VYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAG-AGAGNLDFLR 257
BLAST of CX289074 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 5.420e-32 Identity = 73/126 (57.94%), Postives = 85/126 (67.46%), Query Frame = 3 Query: 183 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 554 YG A SNLVAG+NLE IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ + V P + P N A+ SSGPNA+PLDLFPQ LP+ + AAG G+LD LR Sbjct: 145 YGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQ----ATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALR 266
BLAST of CX289074 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 124.02 bits (310), Expect = 4.748e-28 Identity = 67/127 (52.76%), Postives = 86/127 (67.72%), Query Frame = 3 Query: 183 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLR 554 YG AAS LV+G++LE +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A S GPN++PLDLFPQ +G+ G+L+FLR Sbjct: 135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA------------PVAPASGGPNSSPLDLFPQETV-AAAGSGDLGTLEFLR 248
BLAST of CX289074 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 3.403e-26 Identity = 65/126 (51.59%), Postives = 82/126 (65.08%), Query Frame = 3 Query: 183 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGA--GSLDFLR 554 YG AAS LV+G+++E +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE + P G G S GPN++PLDLFPQ + S AAG G+L+FLR Sbjct: 133 YGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGRE---------LTAPPPSGGPNSSPLDLFPQ---EAVSDAAGGDLGTLEFLR 245 The following BLAST results are available for this feature:
BLAST of CX289074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289074 ID=CX289074; Name=CX289074; organism=Citrus clementina; type=EST; length=555bpback to top |