CX289075

Overview
NameCX289075
Unique NameCX289075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15440 contig Ccv1_Contig15440:577..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.857e-36
Identity = 70/94 (74.47%), Postives = 86/94 (91.49%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESK 508
            KAQ+VGWPP+RS+RKN+LAT+ KN+DEVDG+ GS ALFVKVSMDGAPYLRKVDL++Y+ Y ELSSALEKMF+ FT+GQ GS+GA G++MLSE+K
Sbjct:  181 KAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETK 274          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.466e-35
Identity = 73/95 (76.84%), Postives = 82/95 (86.32%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATS-SKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESK 508
            KAQVVGWPPIRS+RKN++A+S SKN DEVDGK G   LFVKVSMDGAPYLRKVDL+ Y+ YQ+LSSALEKMFSCFT+GQ G HGA GRE +SE K
Sbjct:  163 KAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIK 257          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.421e-30
Identity = 68/103 (66.02%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSK----NN---DEVDGKAGSS--ALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESK 508
            KAQVVGWPPIRSFRKNS+A+S      NN   +E + K+G     L+VKVSM+GAPYLRK+DLK Y  Y ELSSALEKMFSCFTIGQ+GSHG  GR+ L+ES+
Sbjct:  141 KAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESR 243          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.522e-27
Identity = 71/156 (45.51%), Postives = 86/156 (55.13%), Query Frame = 2
Query:   56 PNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHANNETITXXXXXXXXXXXXXXXKAQVVGWPPIRSFRKNSLATSS-----KNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESK 508
            P  G K G     +G    + +E A  KA      A  E                  KAQVVGWPPIRS+RKN++A S      K++ E      S  L+VKVSMDGAPYLRKVDLK Y  Y+ELS ALEKMFSCFT+G   S+G  GR+ LS+ +
Sbjct:   56 PKGGAKRGFADAIVGGPAGQRREAAGGKAAAAAAEAEEEE-------EKKKAQAPAAKAQVVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCR 204          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.063e-25
Identity = 65/101 (64.36%), Postives = 73/101 (72.28%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSS-KNNDEVDG---KAGS---SALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESK 508
            KAQVVGWPP+RS+RKN LA  + K  D  DG   K+G+   +A FVKVSMDGAPYLRKVDLK Y  Y ELS ALEKMFS FTIG  GSHG  G   ++ESK
Sbjct:  118 KAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNG---MNESK 215          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.063e-25
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSS-KNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSE 502
            KAQVVGWPP+RS+RKN+LA S+ K   E  GK+     +VKVSMDGAPYLRKVDLK YS Y++LS ALEKMFSCF  G+  SH    R+ L++
Sbjct:  125 KAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGAPYLRKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTD 217          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.225e-25
Identity = 58/92 (63.04%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATS-SKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLS 499
            KAQVVGWPP+R++RKN+LA S SK   E  G A    L+VKVSMDGAPYLRKVDLK YS Y++LS ALEKMFSCF  GQ G   +  R+ L+
Sbjct:  115 KAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLT 206          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 5.225e-25
Identity = 58/92 (63.04%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATS-SKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLS 499
            KAQVVGWPP+R++RKN+LA S SK   E  G A    L+VKVSMDGAPYLRKVDLK YS Y++LS ALEKMFSCF  GQ G   +  R+ L+
Sbjct:  116 KAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLT 207          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.287e-23
Identity = 60/130 (46.15%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  119 KEMANQKAVQERPHANNETITXXXXXXXXXXXXXXXKAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESK 508
            KE A   A    P   ++T+                K QVVGWPP+RSFRKN LA      +E +  +  +A FVKVSMDGAPYLRKVDLK Y  Y+ELS +L KMFS FT G   S G   ++ ++ESK
Sbjct:   52 KEAATTAAAAADPTDKHKTLPKEKTLLPADPAKPPAKTQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGM--KDFMNESK 179          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.195e-23
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNN-DEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESK 508
            KAQVVGWPP+R++RKN +A       +E     G +  FVKVSMDGAPYLRKVDLK Y+ Y++LS AL KMFS FT+G YG+ G +  + ++ESK
Sbjct:   74 KAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMI--DFMNESK 166          
The following BLAST results are available for this feature:
BLAST of CX289075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IAA9_ARATH3.857e-3674.47Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA8_ARATH1.466e-3576.84Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA27_ARATH2.421e-3066.02Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA21_ORYSJ9.522e-2745.51Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]
IAA30_ORYSJ3.063e-2564.36Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA19_ORYSJ3.063e-2561.29Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]
IAA5_ORYSJ5.225e-2563.04Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA5_ORYSI5.225e-2563.04Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
AUX28_SOYBN1.287e-2346.15Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]
IAA14_ARATH2.195e-2355.79Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC02008G12SK IF1 Citrus clementina cDNA clone C02008G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289075 ID=CX289075; Name=CX289075; organism=Citrus clementina; type=EST; length=509bp
GTTCTTAGAGGGGAAATATCTTTCTAGTTCTGAGCTATTGTCACCCAGGG
CTGCTCCAAACTTGGGGCTGAAGTCAGGTTCTATTCAAGAGAACCTTGGG
CCTCAAACCGCTAAAGGCAAAGAGATGGCCAACCAAAAAGCAGTGCAGGA
AAGGCCTCATGCTAACAATGAGACCATAACAAACCATAATGGTTCTGCAA
ATAACAGTAGCAGTGCACCTGCTGCCAAGGCACAGGTTGTGGGTTGGCCA
CCAATTAGATCATTTAGGAAGAATTCATTGGCCACTTCGTCTAAGAATAA
TGACGAAGTAGATGGAAAAGCAGGTTCCAGTGCTCTGTTTGTTAAGGTCA
GCATGGATGGTGCTCCTTATTTAAGAAAAGTGGACTTGAAAAATTACTCT
AAATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTAC
AATTGGGCAATATGGATCTCATGGGGCTCTGGGCAGGGAGATGCTGAGTG
AAAGCAAGT
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