CX289077

Overview
NameCX289077
Unique NameCX289077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD54_MOUSE (DNA repair and recombination protein RAD54-like OS=Mus musculus GN=Rad54l PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 2.652e-52
Identity = 107/177 (60.45%), Postives = 123/177 (69.49%), Query Frame = 3
Query:   15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            L+ IT+LKKLCNHP LIYD   +   G   FE  +  FPP   S              +LSGKM VL  +L   R R+ D++VLVSNYTQTLDLF +LCR RRY Y+RLDGT SI KR K+V  FN PS  +F F+LSSKAGGCGLNLIG NRLV+FDPDWNPAND+QA ARVWRDG
Sbjct:  447 LSSITSLKKLCNHPALIYDKCVAEEDG---FEGTLGIFPPGYNS---------KAVEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVRRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 611          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD54_HUMAN (DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 7.717e-52
Identity = 107/177 (60.45%), Postives = 121/177 (68.36%), Query Frame = 3
Query:   15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            L+ IT+LKKLCNHP LIYD       G  G  D    FPP   S              +LSGKM VL  +L   R R+ D++VLVSNYTQTLDLF +LCR RRY Y+RLDGT SI KR K+V  FN PS  +F F+LSSKAGGCGLNLIG NRLV+FDPDWNPAND+QA ARVWRDG
Sbjct:  447 LSSITSLKKLCNHPALIYDKCVEEEDGFVGALD---LFPPGYSS---------KALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 611          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD54_CHICK (DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus GN=RAD54L PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.114e-50
Identity = 105/177 (59.32%), Postives = 122/177 (68.93%), Query Frame = 3
Query:   15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            L+ IT+LKKLCNHP LIYD       G  G  D      P  +S +S           +LSGKM VL  +L   +  ++D++VLVSNYTQTLDLF +LCR RRY Y+RLDGT SI KR K+V  FN PS  EF F+LSSKAGGCGLNLIG NRLV+FDPDWNPAND+QA ARVWRDG
Sbjct:  436 LSSITSLKKLCNHPALIYDKCVEEEEGFMGALDLF----PAGYSTKSVE--------PQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 600          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD54_SCHPO (DNA repair protein rhp54 OS=Schizosaccharomyces pombe GN=rhp54 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.609e-49
Identity = 105/181 (58.01%), Postives = 122/181 (67.40%), Query Frame = 3
Query:    6 SKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGR-SGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            S+ L  I  LKK+CNHP L+  T           E C   FPP        G     D +   LSGKM VL R+L  ++Q TDD+IVL+SNYT TLDLF QLCR R Y  LRLDGT +++KRQ+LV+ FNDP KD F FLLSSKAGGCG+NLIG NRL+LFDPDWNPA D+QA ARVWRDG
Sbjct:  556 SQPLKAIGLLKKICNHPDLLNLT--------EDLEGCEALFPPGFIPRELRGRDRNIDSS---LSGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDG 725          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD54_YEAST (DNA repair and recombination protein RAD54 OS=Saccharomyces cerevisiae GN=RAD54 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.459e-42
Identity = 92/180 (51.11%), Postives = 115/180 (63.89%), Query Frame = 3
Query:    6 SKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            S+ L  I  LKKLCNHP L+    +        F+D      P+ ++              + S K  +L R L  ++  +DD+IVL+SNYTQTLDL  ++CR + Y  +RLDGT SI+KRQKLV+ FNDP   EF FLLSSKAGGCG+NLIG NRL+L DPDWNPA D+QA ARVWRDG
Sbjct:  602 SQPLRAIGILKKLCNHPNLLNFEDE--------FDDEDDLELPDDYNMPGSK---ARDVQTKYSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDG 770          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RA54B_HUMAN (DNA repair and recombination protein RAD54B OS=Homo sapiens GN=RAD54B PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.410e-37
Identity = 84/181 (46.41%), Postives = 116/181 (64.09%), Query Frame = 3
Query:   15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWV---ELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            L  I ALKKLCNHP L++++IK     +T    C +     ++ G    +       +   + SGK+ VL++LL  + + R  +++VLVSNYTQTL++  ++C+   Y Y RLDG T IS+RQ++V+ FN      F FLLSSKAGG GLNLIGG+ L+L+D DWNPA D QA +RVWRDG
Sbjct:  582 LICIGALKKLCNHPCLLFNSIKEKECSST----CDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDG 758          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RA54B_CHICK (DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.256e-35
Identity = 83/186 (44.62%), Postives = 115/186 (61.83%), Query Frame = 3
Query:   15 LAYITALKKLCNHPKLIYDTIKSG--------NPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            L  I ALKKLCNHP L++  +K          +  ++ +E     FP +        +T    + ++ SGK+ VL +LL  +R+  + +R+VLVSNYTQTL++  + C+   Y Y RLDG T +S+RQ++V+ FN      F FLLSSKAGG GLNL+G + L+L+D DWNPA D QA ARVWRDG
Sbjct:  589 LICIGALKKLCNHPCLLFKALKEKCCDPKSDEHVESSLYEGLTDVFPQD--------YTSDTFSEID-SGKLQVLVKLLAAIRELSSSERVVLVSNYTQTLNVLLETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDG 765          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RA54B_MOUSE (DNA repair and recombination protein RAD54B OS=Mus musculus GN=Rad54b PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.563e-35
Identity = 81/181 (44.75%), Postives = 109/181 (60.22%), Query Frame = 3
Query:   15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWV---ELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            L  I ALKKLCNHP L++ ++K    G      C       +  G    +  G        E SGK+ VL +LL  + + R  ++++LVSNY QTL++  ++C+   Y   RLDG T +S+RQ +V+ FN     +F FLLSSKAGG GLNLIGG+ L+L+D DWNPA D QA +RVWRDG
Sbjct:  560 LICIGALKKLCNHPCLLFSSVK----GKEFSSSCEENEERNLCQGLLSVFPAGYNPLQFSEEESGKLQVLVKLLAVIHELRPTEKVILVSNYRQTLNVLEEVCKRHGYACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDG 736          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ERCC6_HUMAN (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.122e-26
Identity = 67/181 (37.02%), Postives = 100/181 (55.25%), Query Frame = 3
Query:    3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            + +I + + AL+K+CNHP    D    G     G  D       E+   + G W        + SGKM V+  LL  +  +   R++L S   Q LD+     R ++Y YL++DGTT+I+ RQ L+  +N+ +   F FLL+++ GG G+NL G NR+V++DPDWNP+ D QA  R WR G
Sbjct:  792 EMQIFSGLIALRKICNHP----DLFSGGPKNLKGLPD------DELEEDQFGYW--------KRSGKMIVVESLL-KIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSI-FVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIG 952          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RDH54_YEAST (DNA repair and recombination protein RDH54 OS=Saccharomyces cerevisiae GN=RDH54 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 4.714e-25
Identity = 72/180 (40.00%), Postives = 99/180 (55.00%), Query Frame = 3
Query:    6 SKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            S  L  IT LKK+CN            +PG  G +   +    +  S  S S +         SGK+ VL  LL  +R+ T +++V+VSNYTQTLD+   L       + RLDG+    +R  +V  FN  +   F FLLS+K+GG GLNL+G +RL+LFD DWNP+ D QA +R+ RDG
Sbjct:  585 SSSLGLITLLKKVCN------------SPGLVGSDPYYKSHIKDTQSQDSYSRSLN-------SGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDSIVTSFNR-NPAIFGFLLSAKSGGVGLNLVGRSRLILFDNDWNPSVDLQAMSRIHRDG 744          
The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
RAD54_MOUSE2.652e-5260.45DNA repair and recombination protein RAD54-like OS... [more]
RAD54_HUMAN7.717e-5260.45DNA repair and recombination protein RAD54-like OS... [more]
RAD54_CHICK1.114e-5059.32DNA repair and recombination protein RAD54-like (F... [more]
RAD54_SCHPO1.609e-4958.01DNA repair protein rhp54 OS=Schizosaccharomyces po... [more]
RAD54_YEAST1.459e-4251.11DNA repair and recombination protein RAD54 OS=Sacc... [more]
RA54B_HUMAN2.410e-3746.41DNA repair and recombination protein RAD54B OS=Hom... [more]
RA54B_CHICK2.256e-3544.62DNA repair and recombination protein RAD54B OS=Gal... [more]
RA54B_MOUSE6.563e-3544.75DNA repair and recombination protein RAD54B OS=Mus... [more]
ERCC6_HUMAN1.122e-2637.02DNA excision repair protein ERCC-6 OS=Homo sapiens... [more]
RDH54_YEAST4.714e-2540.00DNA repair and recombination protein RDH54 OS=Sacc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02008H02SK IF1 Citrus clementina cDNA clone C02008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bp
AGCAATCCAAGATTTTGGCTTATATCACAGCTCTTAAGAAGCTCTGTAAT
CATCCCAAGCTTATCTACGATACTATAAAAAGTGGAAATCCAGGAACCAC
AGGATTTGAGGACTGTATACGTTTTTTCCCTCCAGAGATGTTCTCTGGAA
GATCTGGATCATGGACTGGAGGTGATGGGGCTTGGGTTGAACTATCTGGA
AAAATGCATGTCTTAGCCCGGTTACTGGGCCATCTACGGCAGAGAACTGA
TGACCGAATTGTTCTGGTCTCAAATTATACTCAGACACTGGATCTATTTG
CTCAATTGTGTCGTGAAAGAAGGTATCCATACTTGAGGCTGGATGGAACT
ACATCAATCAGCAAAAGACAGAAGTTAGTGAATCACTTTAATGACCCATC
AAAGGATGAGTTTGCTTTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGCC
TCAATTTAATTGGTGGTAATCGACTTGTGTTGTTTGATCCTGATTGGAAT
CCAGCCAATGATAAACAAGCTGCTGCAAGAGTTTGGAGGGATGGA
back to top