CX289077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD54_MOUSE (DNA repair and recombination protein RAD54-like OS=Mus musculus GN=Rad54l PE=2 SV=2) HSP 1 Score: 204.527 bits (519), Expect = 2.652e-52 Identity = 107/177 (60.45%), Postives = 123/177 (69.49%), Query Frame = 3 Query: 15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 L+ IT+LKKLCNHP LIYD + G FE + FPP S +LSGKM VL +L R R+ D++VLVSNYTQTLDLF +LCR RRY Y+RLDGT SI KR K+V FN PS +F F+LSSKAGGCGLNLIG NRLV+FDPDWNPAND+QA ARVWRDG Sbjct: 447 LSSITSLKKLCNHPALIYDKCVAEEDG---FEGTLGIFPPGYNS---------KAVEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVRRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 611
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD54_HUMAN (DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2) HSP 1 Score: 202.986 bits (515), Expect = 7.717e-52 Identity = 107/177 (60.45%), Postives = 121/177 (68.36%), Query Frame = 3 Query: 15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 L+ IT+LKKLCNHP LIYD G G D FPP S +LSGKM VL +L R R+ D++VLVSNYTQTLDLF +LCR RRY Y+RLDGT SI KR K+V FN PS +F F+LSSKAGGCGLNLIG NRLV+FDPDWNPAND+QA ARVWRDG Sbjct: 447 LSSITSLKKLCNHPALIYDKCVEEEDGFVGALD---LFPPGYSS---------KALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 611
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD54_CHICK (DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus GN=RAD54L PE=2 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 1.114e-50 Identity = 105/177 (59.32%), Postives = 122/177 (68.93%), Query Frame = 3 Query: 15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 L+ IT+LKKLCNHP LIYD G G D P +S +S +LSGKM VL +L + ++D++VLVSNYTQTLDLF +LCR RRY Y+RLDGT SI KR K+V FN PS EF F+LSSKAGGCGLNLIG NRLV+FDPDWNPAND+QA ARVWRDG Sbjct: 436 LSSITSLKKLCNHPALIYDKCVEEEEGFMGALDLF----PAGYSTKSVE--------PQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 600
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD54_SCHPO (DNA repair protein rhp54 OS=Schizosaccharomyces pombe GN=rhp54 PE=1 SV=2) HSP 1 Score: 195.282 bits (495), Expect = 1.609e-49 Identity = 105/181 (58.01%), Postives = 122/181 (67.40%), Query Frame = 3 Query: 6 SKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGR-SGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 S+ L I LKK+CNHP L+ T E C FPP G D + LSGKM VL R+L ++Q TDD+IVL+SNYT TLDLF QLCR R Y LRLDGT +++KRQ+LV+ FNDP KD F FLLSSKAGGCG+NLIG NRL+LFDPDWNPA D+QA ARVWRDG Sbjct: 556 SQPLKAIGLLKKICNHPDLLNLT--------EDLEGCEALFPPGFIPRELRGRDRNIDSS---LSGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDG 725
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD54_YEAST (DNA repair and recombination protein RAD54 OS=Saccharomyces cerevisiae GN=RAD54 PE=1 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.459e-42 Identity = 92/180 (51.11%), Postives = 115/180 (63.89%), Query Frame = 3 Query: 6 SKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 S+ L I LKKLCNHP L+ + F+D P+ ++ + S K +L R L ++ +DD+IVL+SNYTQTLDL ++CR + Y +RLDGT SI+KRQKLV+ FNDP EF FLLSSKAGGCG+NLIG NRL+L DPDWNPA D+QA ARVWRDG Sbjct: 602 SQPLRAIGILKKLCNHPNLLNFEDE--------FDDEDDLELPDDYNMPGSK---ARDVQTKYSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDG 770
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RA54B_HUMAN (DNA repair and recombination protein RAD54B OS=Homo sapiens GN=RAD54B PE=1 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 2.410e-37 Identity = 84/181 (46.41%), Postives = 116/181 (64.09%), Query Frame = 3 Query: 15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWV---ELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 L I ALKKLCNHP L++++IK +T C + ++ G + + + SGK+ VL++LL + + R +++VLVSNYTQTL++ ++C+ Y Y RLDG T IS+RQ++V+ FN F FLLSSKAGG GLNLIGG+ L+L+D DWNPA D QA +RVWRDG Sbjct: 582 LICIGALKKLCNHPCLLFNSIKEKECSST----CDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDG 758
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RA54B_CHICK (DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 2.256e-35 Identity = 83/186 (44.62%), Postives = 115/186 (61.83%), Query Frame = 3 Query: 15 LAYITALKKLCNHPKLIYDTIKSG--------NPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 L I ALKKLCNHP L++ +K + ++ +E FP + +T + ++ SGK+ VL +LL +R+ + +R+VLVSNYTQTL++ + C+ Y Y RLDG T +S+RQ++V+ FN F FLLSSKAGG GLNL+G + L+L+D DWNPA D QA ARVWRDG Sbjct: 589 LICIGALKKLCNHPCLLFKALKEKCCDPKSDEHVESSLYEGLTDVFPQD--------YTSDTFSEID-SGKLQVLVKLLAAIRELSSSERVVLVSNYTQTLNVLLETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDG 765
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RA54B_MOUSE (DNA repair and recombination protein RAD54B OS=Mus musculus GN=Rad54b PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 6.563e-35 Identity = 81/181 (44.75%), Postives = 109/181 (60.22%), Query Frame = 3 Query: 15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWV---ELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 L I ALKKLCNHP L++ ++K G C + G + G E SGK+ VL +LL + + R ++++LVSNY QTL++ ++C+ Y RLDG T +S+RQ +V+ FN +F FLLSSKAGG GLNLIGG+ L+L+D DWNPA D QA +RVWRDG Sbjct: 560 LICIGALKKLCNHPCLLFSSVK----GKEFSSSCEENEERNLCQGLLSVFPAGYNPLQFSEEESGKLQVLVKLLAVIHELRPTEKVILVSNYRQTLNVLEEVCKRHGYACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDG 736
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ERCC6_HUMAN (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.122e-26 Identity = 67/181 (37.02%), Postives = 100/181 (55.25%), Query Frame = 3 Query: 3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 + +I + + AL+K+CNHP D G G D E+ + G W + SGKM V+ LL + + R++L S Q LD+ R ++Y YL++DGTT+I+ RQ L+ +N+ + F FLL+++ GG G+NL G NR+V++DPDWNP+ D QA R WR G Sbjct: 792 EMQIFSGLIALRKICNHP----DLFSGGPKNLKGLPD------DELEEDQFGYW--------KRSGKMIVVESLL-KIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSI-FVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIG 952
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RDH54_YEAST (DNA repair and recombination protein RDH54 OS=Saccharomyces cerevisiae GN=RDH54 PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 4.714e-25 Identity = 72/180 (40.00%), Postives = 99/180 (55.00%), Query Frame = 3 Query: 6 SKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 S L IT LKK+CN +PG G + + + S S S + SGK+ VL LL +R+ T +++V+VSNYTQTLD+ L + RLDG+ +R +V FN + F FLLS+K+GG GLNL+G +RL+LFD DWNP+ D QA +R+ RDG Sbjct: 585 SSSLGLITLLKKVCN------------SPGLVGSDPYYKSHIKDTQSQDSYSRSLN-------SGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDSIVTSFNR-NPAIFGFLLSAKSGGVGLNLVGRSRLILFDNDWNPSVDLQAMSRIHRDG 744 The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 152
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bpback to top |