CX289079

Overview
NameCX289079
Unique NameCX289079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13842 contig Ccv1_Contig13842:378..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 5.294e-65
Identity = 109/133 (81.95%), Postives = 118/133 (88.72%), Query Frame = 2
Query:    2 FSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFCH 400
            F LHHGH D S+YGVSLVDGFN+P+TVTPHEGKGVCPVVGCRA+LL +CP  LQ RS  GHGPVV CKS CEAF +DE CCRNHYNSPQTC+ SS+S+FFKHACPAT TYAHDSPSLMHECSSPRELKVIFCH
Sbjct:  120 FVLHHGHADFSTYGVSLVDGFNIPLTVTPHEGKGVCPVVGCRANLLESCPAVLQFRSHGGHGPVVGCKSACEAFKSDEFCCRNHYNSPQTCKPSSYSQFFKHACPATFTYAHDSPSLMHECSSPRELKVIFCH 252          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.404e-25
Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 2
Query:   26 DLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            +L  Y VSLVDG+N+ M++ P +G G C   GC +DL   CP  LQVRS  G   VVACKS C AF + + CC   + +PQ+C+ +++S+ FK ACP   +YA+D P+ +  CS    + V FC
Sbjct:  117 ELDFYDVSLVDGYNLAMSIMPVKGSGQCSYAGCVSDLNQMCPVGLQVRSRNGKR-VVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATCSKANYI-VTFC 238          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.734e-24
Identity = 52/120 (43.33%), Postives = 68/120 (56.67%), Query Frame = 2
Query:   38 YGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            Y VSLVDGFN+PM+VTP  G G C    C A++ A CP  LQ +     G VVAC S C  FGT + CC    N+P+TC  +++SE F +ACP   +YA+D       C+      + FC
Sbjct:  127 YDVSLVDGFNLPMSVTPQGGTGDCKTASCPANVNAVCPSELQKKG--SDGSVVACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFC 244          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.838e-23
Identity = 50/120 (41.67%), Postives = 69/120 (57.50%), Query Frame = 2
Query:   38 YGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            Y VSLVDGFN+PM+V P  G G C    C A++   CP  LQV++    G V++CKS C AFG  + CC    N+P+TC  + +SE F+  CP   +YA+D  +    CS   +  + FC
Sbjct:  128 YDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNKVCPAPLQVKA--ADGSVISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 245          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.551e-23
Identity = 49/120 (40.83%), Postives = 69/120 (57.50%), Query Frame = 2
Query:   38 YGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            Y VSLVDGFN+PM+V P  G G C    C A++   CP  LQV++    G V++CKS C AFG  + CC    ++P+TC  + +SE F+  CP   +YA+D  +    CS   +  + FC
Sbjct:   94 YDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNMACPAQLQVKA--ADGSVISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 211          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.551e-23
Identity = 51/120 (42.50%), Postives = 68/120 (56.67%), Query Frame = 2
Query:   38 YGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            Y VSLVDG+NV + + P  G G C   GC +DL A CP  L+V        VVACKS CE F TD+ CCR   + P+TC  + +S  FK+ACP   +YA+D  +    C+     ++ FC
Sbjct:  123 YDVSLVDGYNVKLGIRPSGGSGDCKYAGCVSDLNAACPDMLKVMD---QNNVVACKSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTG-ANYEITFC 238          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.249e-22
Identity = 51/120 (42.50%), Postives = 64/120 (53.33%), Query Frame = 2
Query:   38 YGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            Y VSLVDGFN+PM+V P  G G C    C AD+   CP  LQV+     G V+ACKS C AF   + CC    + P+TC    +S+ FK  CP   +YA+D  S    CS      + FC
Sbjct:  128 YDVSLVDGFNLPMSVAPQGGTGKCKASTCPADINKVCPAPLQVKG--SDGSVIACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFC 245          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.244e-22
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = 2
Query:   38 YGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            Y VSLVDG+N+P++V    G G C    CRA++ A CP  LQV+       V+ACKS C AF   + CC   +++ +TC A+ +S  FK  CP   +YA+D  +    CS   +  + FC
Sbjct:  125 YDVSLVDGYNLPVSVATRGGTGDCKATSCRANVNAVCPAELQVKG--SDASVLACKSACTAFNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFC 242          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.365e-20
Identity = 49/120 (40.83%), Postives = 63/120 (52.50%), Query Frame = 2
Query:   38 YGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            Y VSLVDGFN P+++    G   C    C AD+   CP  L+VR   G   V  C+S C A G D  CC   Y SP  CR + FS  FK  CP   +YA+D  + ++ C + R L + FC
Sbjct:  132 YDVSLVDGFNAPVSMAAVGGGVGCGTAACGADVNVCCPSALEVRDREGR--VAGCRSACRAMGGDRYCCTGDYASPSACRPTIFSHLFKAICPRAYSYAYDDATSLNRCHAKRYL-ITFC 248          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.329e-20
Identity = 45/120 (37.50%), Postives = 61/120 (50.83%), Query Frame = 2
Query:   38 YGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            Y VSLVDGFN+P+ + P  G G C    C A++   CP  L  +     G V+ CKS C A    + CC   Y +P TC  + FS+ FK+ CP   +YA+D  S    C      ++ FC
Sbjct:  126 YDVSLVDGFNLPIKLAPRGGSGDCNSTSCAANINTVCPAELSDKG--SDGSVIGCKSACLALNQPQYCCTGAYGTPDTCPPTDFSKVFKNQCPQAYSYAYDDKSSTFTCFGGPNYEITFC 243          
The following BLAST results are available for this feature:
BLAST of CX289079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
OLP1_SOLLC5.294e-6581.95Osmotin-like protein OS=Solanum lycopersicum PE=1 ... [more]
TLPH_ARATH2.404e-2544.35Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
TLP_PRUAV7.734e-2443.33Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TP1A_MALDO3.838e-2341.67Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TP1B_MALDO8.551e-2340.83Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
PR5_ARATH8.551e-2342.50Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLP1_PRUPE3.249e-2242.50Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TLP1_CASSA4.244e-2239.17Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
TLPH_ORYSJ1.365e-2040.83Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
TLP1_PYRPY2.329e-2037.50Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]

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Properties
Property NameValue
Genbank descriptionC02008H04SK IF1 Citrus clementina cDNA clone C02008H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289079 ID=CX289079; Name=CX289079; organism=Citrus clementina; type=EST; length=578bp
GTTCAGCCTCCACCACGGCCACAACGACCTCTCCTCCTACGGTGTCTCTC
TCGTCGACGGCTTCAACGTCCCAATGACTGTCACCCCGCACGAGGGCAAG
GGCGTCTGTCCGGTGGTGGGTTGTCGCGCTGATCTGCTAGCCACGTGTCC
TCAGAACCTGCAGGTGAGGTCACCGCCGGGTCACGGCCCCGTGGTGGCAT
GTAAGAGTGGGTGTGAGGCGTTTGGTACGGACGAGCTGTGTTGTAGGAAC
CATTACAACAGTCCGCAGACATGTCGGGCTTCGAGCTTTTCGGAGTTCTT
CAAGCACGCTTGTCCAGCCACGATGACTTATGCCCATGATAGCCCTTCGC
TGATGCATGAGTGCTCCTCGCCACGTGAGCTCAAAGTTATTTTCTGTCAC
TAGAGAAGCATGAGAATAATAATAAGCTGGACCATCAAGCTTCACAGTGC
TTAGGATTGTTGTGTTTGTTTTCGTCAATTAGCAGTATCTTGCTTTTTAA
TTAATCTCGTAACTAAAAGGAGAAATTAAAAATGATCAATGTGAGCTTGT
GTCATGTTGGGTGTCATCAGTCTGTAAG
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