CX289080

Overview
NameCX289080
Unique NameCX289080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289080_ssr183 microsatellite CX289080_ssr183:183..194. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10513 contig Ccv1_Contig10513:12..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = 3
Query:  309 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 623
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDD 109          
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = 3
Query:  309 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 623
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDD 109          
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = 3
Query:  309 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 623
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDD 109          
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = 3
Query:  309 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 623
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDD 109          
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 47/108 (43.52%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  309 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 623
            +LW+GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+ ++G  ++ D++P++++FVGDL  DV D
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG--KQPDNSPEYSLFVGDLTPDVDD 109          
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 3
Query:  309 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVLQTYNGTPMPNGEQNFRLNWASFGAGEKRD---DTPDHTIFVGDLAADVTD 623
            TLW+GDL+ WMD T++   +A   E V VKV+R+K +    +  Y F++F S A AER L  YN T +P     F+LNWA+ G  +  +     P+ +IFVGDL     D
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTED 195          
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 41/109 (37.61%), Postives = 67/109 (61.47%), Query Frame = 3
Query:  309 TLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDY 626
            +LW+GDL  +MDE ++   F+  GE    VK+I ++ TG   GY F+E    A  +R +Q  NG  +P  N  + F+LN+A++  G++ +  P+ ++FVGDL ++V DY
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATY--GKRPEPGPEFSVFVGDLTSEVDDY 113          
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  309 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDY 626
            TLW+G+L+ W+ E ++   +   G+ V VK+IRN+ TG   GY F+EF S   A   + + N  P+P     F+LNWAS G   ++      +++IFVGDL+ +V ++
Sbjct:   94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEF 200          
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14
Identity = 41/110 (37.27%), Postives = 68/110 (61.82%), Query Frame = 3
Query:  303 IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 623
            + +LW+G+L+ +MDE ++   FA  GE VV +++IR+K TG+  GYGF+E       ER L+  NG P+P     + F+L+ +++G   K+ ++   ++FV DL  DV D
Sbjct:    1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDD 107          
The following BLAST results are available for this feature:
BLAST of CX289080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TSAP1_RAT2.327e-1944.44tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_MOUSE2.327e-1944.44tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSAP1_HUMAN2.327e-1944.44tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN2.327e-1944.44tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_PONAB6.770e-1943.52tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
CSX1_SCHPO5.364e-1640.91RNA-binding post-transcriptional regulator csx1 OS... [more]
TSP1L_DANRE4.541e-1537.61tRNA selenocysteine 1-associated protein 1-like OS... [more]
YG41_SCHPO1.726e-1437.04Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
TSAP1_DANRE2.943e-1437.27tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
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Properties
Property NameValue
Genbank descriptionC02008H05SK IF1 Citrus clementina cDNA clone C02008H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289080 ID=CX289080; Name=CX289080; organism=Citrus clementina; type=EST; length=628bp
GTTAGGGTTTGTTTCTCGCTTCAGAGTTCAGATTATTCTCTCGTTCAATC
TCAATAACGATCATGATGCAGCCAGCGCCCGGAGCGGTCCCACCCCCGCC
ACCACCGATGGCCGCTCACCAGTACCAATACCAACAACAGGCGCCGCCTC
AGCAGCAGCCGCCACCGCAACCCTCGCCGTACATGATGATGATGCCGCCT
CAGCCCCAGGCCCAGCCTCCTGCCATGTGGGCCACGCATGCTGCTGCTCC
TCAGGCAGCGGGAGTTGCGGTACCGCCTCAGCAGCAGGGTCAGCCCGGTG
AGATCCGGACCCTGTGGATCGGGGACTTGCAGTATTGGATGGATGAGACC
TATCTCAACACTTGTTTTGCACACACCGGCGAGGTTGTCGCTGTAAAAGT
AATTCGTAATAAGCAAACTGGTCAAATAGAAGGTTATGGATTTATTGAGT
TTATTTCGCGTGCTGGTGCTGAAAGAGTTTTGCAGACATATAACGGTACC
CCTATGCCAAACGGTGAGCAGAACTTCAGGCTAAACTGGGCATCTTTTGG
TGCTGGCGAGAAGCGCGATGACACCCCTGACCACACAATATTTGTTGGAG
ATTTGGCTGCTGACGTTACTGATTACAT
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