CX289080
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19 Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = 3 Query: 309 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 623 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDD 109
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19 Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = 3 Query: 309 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 623 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDD 109
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19 Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = 3 Query: 309 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 623 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDD 109
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19 Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = 3 Query: 309 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 623 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDD 109
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19 Identity = 47/108 (43.52%), Postives = 74/108 (68.52%), Query Frame = 3 Query: 309 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 623 +LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L NG P+P + F+LN+ ++G ++ D++P++++FVGDL DV D Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG--KQPDNSPEYSLFVGDLTPDVDD 109
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16 Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 3 Query: 309 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVLQTYNGTPMPNGEQNFRLNWASFGAGEKRD---DTPDHTIFVGDLAADVTD 623 TLW+GDL+ WMD T++ +A E V VKV+R+K + + Y F++F S A AER L YN T +P F+LNWA+ G + + P+ +IFVGDL D Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTED 195
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15 Identity = 41/109 (37.61%), Postives = 67/109 (61.47%), Query Frame = 3 Query: 309 TLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDY 626 +LW+GDL +MDE ++ F+ GE VK+I ++ TG GY F+E A +R +Q NG +P N + F+LN+A++ G++ + P+ ++FVGDL ++V DY Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATY--GKRPEPGPEFSVFVGDLTSEVDDY 113
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14 Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 3 Query: 309 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDY 626 TLW+G+L+ W+ E ++ + G+ V VK+IRN+ TG GY F+EF S A + + N P+P F+LNWAS G ++ +++IFVGDL+ +V ++ Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEF 200
BLAST of CX289080 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14 Identity = 41/110 (37.27%), Postives = 68/110 (61.82%), Query Frame = 3 Query: 303 IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTYNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 623 + +LW+G+L+ +MDE ++ FA GE VV +++IR+K TG+ GYGF+E ER L+ NG P+P + F+L+ +++G K+ ++ ++FV DL DV D Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDD 107 The following BLAST results are available for this feature:
BLAST of CX289080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289080 ID=CX289080; Name=CX289080; organism=Citrus clementina; type=EST; length=628bpback to top |