CX289085

Overview
NameCX289085
Unique NameCX289085
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289085 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 39/94 (41.49%), Postives = 49/94 (52.13%), Query Frame = 1
Query:    1 NISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXXXEGPIPGGPQFNTFGIDSYSGNVGLCGFPLSKICRIDEAP 282
            N+ +NNL+G IP++L  +T LE LDLS N L+G IP                    GPIP G QF TF   S+ GN GLCG   S     D++P
Sbjct:  563 NLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCGEHASPCHITDQSP 656          
BLAST of CX289085 vs. ExPASy Swiss-Prot
Match: PSYR1_ARATH (Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 41/97 (42.27%), Postives = 47/97 (48.45%), Query Frame = 1
Query:   13 NNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXXXEGPIPGGPQFNTFGIDSYSGNVGLCGFPLSKICRIDEAPEPTTPTG 303
            NN +G IP  L NLT LE LDLS+N L+GRIP                    GPIP G QF+TF   ++ GN  LCG  L   C  D     TT  G
Sbjct:  615 NNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTSC--DPTQHSTTKMG 709          
BLAST of CX289085 vs. ExPASy Swiss-Prot
Match: BRI1_ARATH (Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.354e-11
Identity = 35/86 (40.70%), Postives = 44/86 (51.16%), Query Frame = 1
Query:    1 NISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXXXEGPIPGGPQFNTFGIDSYSGNVGLCGFPLSK 258
            N+ HN+++G IP  + +L  L  LDLSSNKL GRIP                    GPIP   QF TF    +  N GLCG+PL +
Sbjct:  684 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 769          
The following BLAST results are available for this feature:
BLAST of CX289085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSKR1_DAUCA6.016e-1341.49Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
PSYR1_ARATH1.135e-1142.27Tyrosine-sulfated glycopeptide receptor 1 OS=Arabi... [more]
BRI1_ARATH7.354e-1140.70Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC02008H10SK IF1 Citrus clementina cDNA clone C02008H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289085 ID=CX289085; Name=CX289085; organism=Citrus clementina; type=EST; length=505bp
AACATTTCTCACAACAACCTGACAGGTGGTATTCCATCGTCGCTAAGAAA
TCTAACAGAGCTTGAATCTCTAGACCTCTCTTCAAACAAGCTTGCTGGAC
GTATCCCAACACAACTGGCGAGTCTCAATTATCTTTCGGTGTTGAATCTT
TCGAACAACCAGCTCGAGGGACCCATACCAGGAGGACCCCAATTTAATAC
ATTTGGAATTGATTCCTATTCTGGTAACGTGGGGCTGTGTGGATTCCCAT
TATCAAAAATCTGCAGGATTGATGAGGCACCAGAACCAACAACACCAACA
GGATTTATCGAAGGAGACGACGCTTCAAGCTGGTTTGATTGGAAGCTCGC
TATGTTGGGTTACGCATCTGGAGTGGTGATCGGCTTGTCCATCGGATACA
TGGCATTTGTGACTGGAAGGCCACAATGGTTTGTAAGAATGATCGAAAGG
CAGCAATCCAGGAAGCTGAGAAGGGTGATCAGACGAGGCAGAGCTGGTAG
AAGAA
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